1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaatatctccattgttcgagtagaatggccagtgcagttgtaggacagatatcttggcttggaatactgataattacgtgttgcatttgatgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGACGGAGAACTTCTGTGCTGGGGTGAGCGCATCGTCTGCACGTGAATGGAG
species | Oryza sativa |
transcript | LOC_Os02g45250.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTG CTATATCGCAAGAGGGCAAACGAAGCATGCTGAAGCTGGCACGCCGGATGAEST: gi|58666494|gb|CK055180.1|CK055180
genomic: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaa ... atgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGA
EST: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTG CTATATCGCAAGAGGGCAAACGAAGCATGCTGAAGCTGGCACGCCGGATGAEST: gi|58654235|gb|CK042915.1|CK042915
genomic: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaa ... atgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGA
EST: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTG CTATATCGCAAGAGGGCAAACGAAGCATGCTGAAGCGGGCACGCCGGATGAEST: gi|58604792|gb|CK015320.1|CK015320
genomic: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaa ... atgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGA
EST: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTG CTATATCGCAAGAGGGCAAACGAAGCATGCTGAAGCTGGCACGCCGGATGAEST: gi|7273764|gb|AU062749.2|AU062749
genomic: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaa ... atgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGA
EST: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTG CTATATCGCAAGAGGGCAAGCGAAN-ATGCTGAAGCTGGCACGCCGGATGAEST: gi|58598705|gb|CK009233.1|CK009233
genomic: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaa ... atgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGA
EST: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTG CTATATCGCAAGAGGGCAAACGAAGCATGCTGAAGCTGGCACGCCGGATGAEST: gi|58655855|gb|CK044535.1|CK044535
genomic: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaa ... atgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGA
EST: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTG CTATATCGCAAGAGGGCG-GACGAAGCATGCTGAAGCTGGCACGCCGGATG
genomic: CCTTGCCATCCTCATGTCCTCTGCTACAGTGACAGCAAATGACTCGACTGgtacaggaaa ... atgcatgcagCTATATCGCAAGAGGGCAAG-CGAAGCATGCTGAAGCTGGCACGCCGGATG
acagatatcttggcttggaatactgataattacgtgttgcatttgatgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGACGGAGAACTTCTGTGCTGGGGTGAGCGCATCGTCTGCACGTGAATGGAG
aatactgataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatatctccattgttcgagtagaatggccagtgcagttgtaggacagatatcttggcttggaatactgataattacgtgttgcatttgatgcatgcagCTATATCGCAAGAGGGCAAGCGAAGCATGCTGAAGCTGGCACGCCGGATGACGGAGAACTTCTGTGCTGGGGTGAGCGCATCGTCTGCACGTGAATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -ctccatt
- - - - - - - - - - - - - - - - - gcagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgttgc