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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA

Basic information

species Oryza sativa
transcript LOC_Os02g43500.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g43500.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA09G36770.3 (Glycine max), 3'ss of exon 7
gtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAA-TGCAC--GTCATAGTTCAGAAA
 |||||  |     | ||   |  || |   |   |   |||    || | |    |   | ||    ||  |||     | | |    || | |||| |          |  |||||||| ||||||||||||||||||||||| || ||||| |||||||| || || || || ||||||||||| |||||||| |  | ||    | ||||||      
-taaattgg-----tacaagttatttacttgc--taggttcacagcaacagtggttgttgagttt--ttttttatccc--aatcatgttcaactctgaatct-------cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAGGTTCAATAATTATAGTTATC---

upper sequence: LOC_Os02g43500.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA12G00600.3 (Glycine max), 3'ss of exon 7
gtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA
 |||||  |   |        | | |  | |   | |   ||    | |  |    |  | |||   ||| ||||  ||          || | |||| |          || |||||||| ||||||||||||||||| ||||| || ||||| |||||||| || || || || ||||||||||| |||||||| |                     
ataaattgg---tacaagttgttacttgctaggtccacagcaccacagtggttgttgagtgttttttctt-ctatcatgct--------caactctgaatct-------ctgattgcagGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAGAG--------------------

upper sequence: LOC_Os02g43500.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA09G36770.2 (Glycine max), 3'ss of exon 7
gtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA
 |||||  |     | ||   |  || |   |   |   |||    || | |    |   | ||    ||  |||     | | |    || | |||| |          |  |||||||| ||||||||||||||||||||||| || ||||| |||||||| || || || || ||||||||||| |||||||| |                     
-taaattgg-----tacaagttatttacttgc--taggttcacagcaacagtggttgttgagttt--ttttttatccc--aatcatgttcaactctgaatct-------cttcttgcagGTTATGTGTCCAACATGTCTCTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCTTTTGATTAGAG--------------------

upper sequence: LOC_Os02g43500.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA12G00600.1 (Glycine max), 3'ss of exon 7
gtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA
 |||||  |   |        | | |  | |   | |   ||    | |  |    |  | |||   ||| ||||  ||          || | |||| |          || |||||||| ||||||||||||||||| ||||| || ||||| |||||||| || || || || ||||||||||| |||||||| |      || ||  |    |  
ataaattgg---tacaagttgttacttgctaggtccacagcaccacagtggttgttgagtgttttttctt-ctatcatgct--------caactctgaatct-------ctgattgcagGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAGAGGTTCAGTAATTATAGTTATC

upper sequence: LOC_Os02g43500.1 (Oryza sativa), 3'ss of exon 7
lower sequence: PP1S237_60V6.2 (Physcomitrella patens), 3'ss of exon 8
gtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaac--aaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA
             || |||  |      |||     | || || ||||    | |   |||     | || || | ||  ||    |  |    ||||     ||   || |   |||||||||||||||||||||||||||||||| || |||||| |||| ||||| ||||| ||||| ||||| || ||  |                          
------------gttacacggt-----tcaaagcttacgttat-caaagggca-atatatagccttagtttctttcttttat--gtagtcgttgctgaccgggaattgaacacacttgcagGTGATGTGTCCAACATGTCTCTGCACAGGCATGGCACTGGCTAGTGAACACGATCCTCGCATTGACCCTTTCCA--------------------------

upper sequence: LOC_Os02g43500.1 (Oryza sativa), 3'ss of exon 7
lower sequence: PP1S380_25V6.1 (Physcomitrella patens), 3'ss of exon 7
-----gtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcat-----atttccacttgctattttggattgaaaaacagccctgatttcaa-acaaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA
        | ||  | || | || | | | |  | |   | ||   || || |   |   |  ||     ||    | || ||| | | ||| |    |  |     |||| || ||    ||  |||||||||||||||| || ||  | |||||||| |||||  |||| ||||| ||||||||||| || ||||| |||| || |                      
gtaccactattctccattcttcaaatttaatttccatgtcgatcgaatacagaggtttgccagattagccatgaagaattcctactctagat-gcctgatggtgtgcatttaaacacgccttgcctgcagGTGATGTGTCCGACCTGCTTGTGCACGGGAATGGCGTTGGCGAGTGAACACGACCCTCGTATCGATCCTTTTGTTTGA----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33798152|gb|CF324935.1|CF324935
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88587786|gb|CI705560.1|CI705560
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29661124|gb|CB657399.1|CB657399
EST:     TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29619334|gb|CB624346.1|CB624346
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|58608739|gb|CK036772.1|CK036772
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|86859786|gb|CI345434.1|CI345434
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88661720|gb|CI458736.1|CI458736
EST:     TATCTACGCCAAGAACAGAAAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|40491369|gb|BX901479.1|BX901479
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88468873|gb|CI696875.1|CI696875
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGG
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGG
EST: gi|86882326|gb|CI325766.1|CI325766
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88546506|gb|CI476149.1|CI476149
EST:     TATTTACGCCAAGAACAGAGAGGTGCCCAAATTNTTCAGGCGCAGGAAAG                         GTGATGTNTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29684684|gb|CB680959.1|CB680959
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|218480294|gb|FG954453.1|FG954453
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29643098|gb|CB648105.1|CB648105
EST:     TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88418870|gb|CI506631.1|CI506631
EST:     TATGTACGCCAAGGACAGAGAGGTGCCCCAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGGGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88372136|gb|CI641771.1|CI641771
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|66914797|gb|CX101645.1|CX101645
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29660129|gb|CB656404.1|CB656404
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29661191|gb|CB657466.1|CB657466
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88374277|gb|CI513364.1|CI513364
EST:     AGAACAGAGAGGTGCGCAAATTTTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCGCGGGGATGGCAATGGCGAGTGAGCAC
genomic: AGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88448624|gb|CI694015.1|CI694015
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88993265|gb|CI257693.1|CI257693
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|95101156|gb|CI692891.1|CI692891
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29660498|gb|CB656773.1|CB656773
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTTTTTGCACGGGGATGGCAATGGCAAGTGAGCCC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88385098|gb|CI561754.1|CI561754
EST:     NATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88852606|gb|CI008799.1|CI008799
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29660247|gb|CB656522.1|CB656522
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29667086|gb|CB663361.1|CB663361
EST:     TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29687907|gb|CB684182.1|CB684182
EST:     TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTTTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|88450482|gb|CI546982.1|CI546982
EST:     TACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|58030945|gb|CX728488.1|CX728488
EST:     TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: gi|29684442|gb|CB680717.1|CB680717
EST:     TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG                         GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 16

TCTGGTGCTTACTGAACCGGTTTCAACATTCAGCGATGGTGATCAGCCTTTATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACGACCCTCGAATTGATCCGTTTGATTAAAATGCACGTCATAGTTCAGAAA
                            ccctgat  putative branch site (score: 16)
                                 atttcaaacaaaat  TA-rich tract