Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG

Basic information

species Oryza sativa
transcript LOC_Os02g42320.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G085243_T01 (Zea mays), 3'ss of exon 9
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                           |     | |  || |  |     |     | |||     |  | ||| || || |       | ||| | ||| | |  | ||  | |       |||||  |||||  ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||
------------------------------------------gtgtaagatttagagcccattaccaccccctgtgtgccataacagatcatcctttc-----cttctgatttcacatcttatatttataa-------tatgttttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 9
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatc-tgatcagaaataaagtggatttgt-ttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                       | | | |||||    |||| | |  |||   | || |||  ||  |   |   | ||||||       | ||| | ||| |||  | ||          | ||||   |||||  |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||
---------------------------------------tatctacctcatcagtgatta-atgtaagcagcatgtgtgctataattgttcatcctttccc------tctgatttcacatgttatatt----------tgtatggtttcattgtagATACACAGAAGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G115948_T01 (Zea mays), 3'ss of exon 5
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatc-tgatcagaaataaagtggatttgt-ttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                       | | | |||||    |||| | |  ||| | | || |||  ||  |   |   | ||||||       | ||| | ||| |||  | ||          | ||||   |||||  |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||
---------------------------------------tatctacctcatcagtgatta-atgtaaggagcatgtgtgctataattgttcatcctttccc------tctgatttcacatgttatatt----------tgtatggtttcattgtagATACACAGAAGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G850355_T08 (Zea mays), 3'ss of exon 8
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                                        | |||  || ||   |||      |  |  |  | |      |   || | |   |    ||  ||  |  |  |       |||||  |||||  ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||
----------------------------------------------------agtgtaagatttagagcccattaccacccctgtgtgccataacag-atcattctttccttctgatttcac-atcttatatttataatatgttttcattgtagATACACAGAGGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G850355_T06 (Zea mays), 3'ss of exon 2
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                               | || |  ||||     || ||| | ||               ||| | | |  | |  |  ||          | ||| | |||   |  | |  || ||      |||||  |||||  ||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||| ||||||||||
-------------------------------ccactccttgttggagacagtcttaccac------------cctgtgtgccataacagatcattctt---tccttctgatttcac--atcttatattttaa------tatgttttcattgtagATACACAGAGGATATGGAACTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA08G17810.3 (Glycine max), 3'ss of exon 9
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                   ||| | |||   |  |  | ||    | ||   ||  |||  |||     |  || | || |        |||     || || ||  ||||    || |  || |   || |   ||| |||||||| || |||||||||||||||||  |||| || || || ||||||||||| |||||
-----------------------------------actttctttctttggagataattgtgattatgttgagtttcattagttacacctcattttcct-------tat-----catttctatggttg----acttgattgtccactta---cagGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACTCTGAAGGAAGG

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA15G41330.1 (Glycine max), 3'ss of exon 9
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                                 ||  | ||  |  || | ||     ||  |     || ||    ||   | |  |   |  |  ||    | || | ||| |    ||| ||   |   || ||| |||||||| || |||||||||||||||||  |||| || || || ||||||||||| |||||
-------------------------------------------------aagataatt-gtgattatgtttccctgagtgatttgagattcatttgttatacctcattttccccatcatttctatggttga----cttgattgtccacttacagGTACACAGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATGTTGACTCTGAAGGAAGG

upper sequence: LOC_Os02g42320.1 (Oryza sativa), 3'ss of exon 7
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 3'ss of exon 9
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                                                             | |  |  || |    |||     | ||  |   ||  |||| |    |||   |  || |  |   ||    |||| ||||||||||| ||||| |||||||||||||| || || || || |||||  |||| |||||
----------------------------------------------------------------------------gtgataataatttaccatttgtggtgatgagtttatgatcttggaagcatgtc--atttcatcttagtctttgatcagGTACACAGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88956166|gb|CI092454.1|CI092454
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88269320|gb|CI380618.1|CI380618
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGA
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACAC-AGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGA
EST: gi|27554138|gb|CA998038.1|CA998038
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|27576119|gb|CA998813.1|CA998813
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86258904|gb|CI004448.1|CI004448
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88985654|gb|CI016363.1|CI016363
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|3766855|gb|AU030965.1|AU030965
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88203677|gb|CI203526.1|CI203526
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|163917780|gb|EG711302.1|EG711302
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|89178076|gb|CI391255.1|CI391255
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|11414339|gb|AU165132.1|AU165132
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88289213|gb|CI553189.1|CI553189
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88239782|gb|CI238944.1|CI238944
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88263428|gb|CI367202.1|CI367202
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|89197813|gb|CI013803.1|CI013803
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86422896|gb|CI060469.1|CI060469
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|33661637|gb|CF292604.1|CF292604
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86844003|gb|CI336703.1|CI336703
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88977911|gb|CI384393.1|CI384393
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88243911|gb|CI243033.1|CI243033
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88254319|gb|CI352945.1|CI352945
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86546047|gb|CI186253.1|CI186253
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGGAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86493119|gb|CI135752.1|CI135752
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88852675|gb|CI008868.1|CI008868
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|89197364|gb|CI009984.1|CI009984
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86509053|gb|CI151686.1|CI151686
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88965320|gb|CI009356.1|CI009356
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|3767760|gb|AU031787.1|AU031787
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCANACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88995416|gb|CI036991.1|CI036991
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88375025|gb|CI523290.1|CI523290
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88236034|gb|CI235236.1|CI235236
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88452218|gb|CI552926.1|CI552926
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88221720|gb|CI221676.1|CI221676
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88252208|gb|CI350636.1|CI350636
EST:     TCAGCTATGGGGAAAAATGTCTCCAATCCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACACTGGAGCTTGATGATGCCATCCATACTTCCATTTTGA
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACA-TGGAGCTTGATGATGCCATCCATACTGCCATTTTGA
EST: gi|33656047|gb|CF278661.1|CF278661
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|87032496|gb|CI266136.1|CI266136
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGATATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88473338|gb|CI410609.1|CI410609
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86494880|gb|CI137513.1|CI137513
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|87029179|gb|CI276447.1|CI276447
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCGTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88995615|gb|CI022938.1|CI022938
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86602433|gb|CI264761.1|CI264761
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|29613823|gb|CB618836.1|CB618836
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88985585|gb|CI016294.1|CI016294
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86826710|gb|CI364238.1|CI364238
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86868986|gb|CI334358.1|CI334358
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88385141|gb|CI561797.1|CI561797
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88489108|gb|CI426380.1|CI426380
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88201510|gb|CI201865.1|CI201865
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88259408|gb|CI363701.1|CI363701
EST:     GGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: GGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86525993|gb|CI166199.1|CI166199
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|89171067|gb|CI040344.1|CI040344
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCGAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|58586930|gb|CF985238.1|CF985238
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCTATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|396941624|gb|HO188281.1|HO188281
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88240749|gb|CI239911.1|CI239911
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88456958|gb|CI529159.1|CI529159
EST:     TCAGCTATGGGGAAAAGTGTCTCCAATGCAAANACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|25797837|gb|CA753798.1|CA753798
EST:     TCAGCTATGGGGAAAAATGTCTCCNATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88963243|gb|CI026908.1|CI026908
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|86834955|gb|CI346039.1|CI346039
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|33803410|gb|CF327579.1|CF327579
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|33655042|gb|CF277656.1|CF277656
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|5771116|gb|AU078005.1|AU078005
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
EST: gi|88901506|gb|CI008934.1|CI008934
EST:     TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAG                         ATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC
genomic: TCAGCTATGGGGAAAAATGTCTCCAATGCAAAGACATTTCTTGAAAAAAGgtacatagca ... ctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG
                                 cctctttatgtcctc  CT-rich tract
                                   tctttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacatagcataccactaatattgtattgtactacactctgttttcctcaatctgatcagaaataaagtggatttgtttacgaggatatcttctttccaaagttgtatgactgcacttgtactgttgttcaacctctttatgtcctcatttcagATACACAGAAGACATGGAGCTTGATGATGCCATCCATACTGCCATTTTGACTCTGAAAGAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG