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...tgcggcactgttagactttttcatcgagttcatcaaacttcattcattttaaatggggaaatggttattgtcctgatgaatatggcgttgttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG
species | Oryza sativa |
transcript | LOC_Os02g41590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCEST: gi|27576661|gb|CA999355.1|CA999355
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCEST: gi|300215864|gb|HO088490.1|HO088490
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCEST: gi|38470488|gb|CF954619.1|CF954619
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCEST: gi|30227286|gb|CB965178.1|CB965178
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCEST: gi|88719065|gb|CI742575.1|CI742575
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACAEST: gi|88694901|gb|CI738939.1|CI738939
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACA
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCEST: gi|66922324|gb|CX109172.1|CX109172
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCEST: gi|2311475|gb|C27630.1|C27630
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTNCEST: gi|88729190|gb|CI752700.1|CI752700
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGG-AGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCC
EST: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAG TGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
genomic: AAACTGCTACAAATCTGAGCATCTGAAGAAACCGGAGAACTGGGCACTAGgtaatttatt ... ttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCC
attttaaatggggaaatggttattgtcctgatgaatatggcgttgttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG
tcctgat putative branch site (score: 125)
atgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcggcactgttagactttttcatcgagttcatcaaacttcattcattttaaatggggaaatggttattgtcctgatgaatatggcgttgttgtcgacagTGGAGAAAGCAAAATACATCTACATTGCTGGCTTTTTCCTTACGGTCTCCCCAGATTCTATTCAGCTTGTTGCTGAGCATGCTGCCGCTAACAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
tgcggca
- - - - - - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatg