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gtgatcgaccttggcttttaattttgttggtgcaactgattagaaatttaggaataaatcctctatggtcgttatcaaaggaatagtgttccatatctctcttatgtgttctgttgtcatgtttaaacagCTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCACGTTCAGATT
species | Oryza sativa |
transcript | LOC_Os02g39300.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATCGATGAAGCTCAGAAACTTTTGGATGA-GCAGAAGCTCTAAAGAAG CTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCACEST: gi|2312419|gb|C28574.1|C28574
genomic: TGATCGATGAAGCTCAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAGgtgatcgacc ... gtttaaacagCTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCAC
EST: TGATCGATGAAGCTCAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAG CTTGGTGCTCGGCCACAGC-TGTTTCCGGACTCTGCAA-GATGTCAACTCAEST: gi|29666474|gb|CB662749.1|CB662749
genomic: TGATCGATGAAGCTCAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAGgtgatcgacc ... gtttaaacagCTTGGTGCTCGGCCACAGCCTGTT-CCGGACTCTGCAAAGATGTCAACTCA
EST: TGATCGATGAAGCTCAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAG CTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCACEST: gi|29673663|gb|CB669938.1|CB669938
genomic: TGATCGATGAAGCTCAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAGgtgatcgacc ... gtttaaacagCTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCAC
EST: CAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAG CTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCACEST: gi|58608959|gb|CK036992.1|CK036992
genomic: CAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAGgtgatcgacc ... gtttaaacagCTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCAC
EST: TGATCGATGAAGCTCAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAG CTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCAC
genomic: TGATCGATGAAGCTCAGAAACTTTTGGATGAAGCAGAAGCTCTAAAGAAGgtgatcgacc ... gtttaaacagCTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCAC
caaaggaatagtgttccatatctctcttatgtgttctgttgtcatgtttaaacagCTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCACGTTCAGATT
atgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcgaccttggcttttaattttgttggtgcaactgattagaaatttaggaataaatcctctatggtcgttatcaaaggaatagtgttccatatctctcttatgtgttctgttgtcatgtttaaacagCTTGGTGCTCGGCCACAGCCTGTTCCGGACTCTGCAAAGATGTCAACTCACGTTCAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG