1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcgtgctccgtttgtatatctggtacaacgtatttaacctatttcttaattctgttagaatcttacctgagacttgcattcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCGCAAACTCATTACCTAGCTCTGAAGCCAAAACATGGCAGGCATTCCCTG
species | Oryza sativa |
transcript | LOC_Os02g37880.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAG CGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCEST: gi|29685638|gb|CB681913.1|CB681913
genomic: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAGgttcgtgctc ... tcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTC
EST: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAG CGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCEST: gi|218497437|gb|FG966116.1|FG966116
genomic: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAGgttcgtgctc ... tcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTC
EST: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAG CGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCEST: gi|218485512|gb|FG957190.1|FG957190
genomic: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAGgttcgtgctc ... tcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTC
EST: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAG CGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCEST: gi|87021665|gb|CI276064.1|CI276064
genomic: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAGgttcgtgctc ... tcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTC
EST: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAG CGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCEST: gi|33679621|gb|CF307860.1|CF307860
genomic: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAGgttcgtgctc ... tcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTC
EST: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAG CGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTC
genomic: CACCTCCATCAAGCAAAGTCAGCTCAAGATTACCAGACTCCGGGCCACAGgttcgtgctc ... tcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTC
taacctatttcttaattctgttagaatcttacctgagacttgcattcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCGCAAACTCATTACCTAGCTCTGAAGCCAAAACATGGCAGGCATTCCCTG
atcttac putative branch site (score: 23)
tatttcttaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgctccgtttgtatatctggtacaacgtatttaacctatttcttaattctgttagaatcttacctgagacttgcattcatatgtagCGTAAGGAGAAGATTGAAGGAACGGTGTGGGAGCTTGAGCAAGGAATGCTCGCAAACTCATTACCTAGCTCTGAAGCCAAAACATGGCAGGCATTCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC