1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgacaccgatatgtttcttttgaattcaactgttgtgtacccaagagctgaaaatataaataccctattgagtgcataacctggctgaactctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTGTAGAATATGATGGCAAGGCACTCCTGAGCTTCAAGCAGAAAAAGAAAT
species | Oryza sativa |
transcript | LOC_Os02g35470.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTEST: gi|58607528|gb|CK035561.1|CK035561
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: TCATTTCAGCAGAAAATCTCACTGACAACCAGAAG ATCTATGCAGATGGATTGGTTGAGAAAGCATATGAGGATTGGATGCATGTTEST: gi|29666753|gb|CB663028.1|CB663028
genomic: TCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: TGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTEST: gi|84117303|gb|CD151070.1|CD151070
genomic: TGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTEST: gi|29668182|gb|CB664457.1|CB664457
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTEST: gi|87007707|gb|CI287551.1|CI287551
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTEST: gi|3761547|gb|C98795.1|C98795
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: GCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
genomic: GCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
agctgaaaatataaataccctattgagtgcataacctggctgaactctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTGTAGAATATGATGGCAAGGCACTCCTGAGCTTCAAGCAGAAAAAGAAAT
gcataac putative branch site (score: 47)
ctctatt putative PPT
aaaatataaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacaccgatatgtttcttttgaattcaactgttgtgtacccaagagctgaaaatataaataccctattgagtgcataacctggctgaactctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTTGTAGAATATGATGGCAAGGCACTCCTGAGCTTCAAGCAGAAAAAGAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -tgtttct
- - - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - - -agctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctggct