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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccgtgacctcacattgtgaaaattaatgaatgatcatgaagctgcctatttccagattttgatatttttgtagtgtgcactaattgagaaaaatgacagGCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG

Basic information

species Oryza sativa
transcript LOC_Os02g32610.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32610.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 5
---tccgtgacctcacattgtgaaaattaatgaatgatcatgaagctgcctatttccagattttgatatttt-tgtagtgtgcactaattgagaaaaatgacagGCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG
    | |  |   ||     ||||||  |    |  || || ||||    | |||  | ||||  || |||| | ||   |  ||||||   |||||||  |||| || ||||| || ||||||||||||||||||||||| |||
agacctgctagggcatgccttgaaaacaag---acaattataaagccatat-tttggaaatttaaatgttttgtctacattatactaatgaggaaaaattccagGTTCTTTTGGTACTGTGCACCGTGCGGATTGGAATGGTTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665412|gb|CB661687.1|CB661687
EST:     CTTGATTATTCCTTGGAGTGAACTTGTTTTGAAAGAGAAAATTGGAGCTG                         GCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG
genomic: CTTGATTATTCCTTGGAGTGAACTTGTTTTGAAAGAGAAAATTGGAGCTGgtacgttttt ... aaaatgacagGCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG
EST: gi|29664339|gb|CB660614.1|CB660614
EST:     CTTGATTATTCCTTGGAGTGAACTTGTTTTGAAAGAGAAAATTGGAGCTG                         GCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG
genomic: CTTGATTATTCCTTGGAGTGAACTTGTTTTGAAAGAGAAAATTGGAGCTGgtacgttttt ... aaaatgacagGCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctatttccagattttgatatttttgtagtgtgcactaattgagaaaaatgacagGCTCATTTGGAACCGTGCACCGTGCGGATTGGAATGGCTCG
                                 cactaat  putative branch site (score: 2)
           attttgatatttttgt  TA-rich tract