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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatcttgtcatataacctagtctatgccgaaacacagaatcatattctttcagaccaaataataatcccgttgcagGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGA

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G477146_T01 (Zea mays), 3'ss of exon 7
gtgagatcttg-tcatataacctagtctatgccgaaacacagaatcatattctttcagaccaa--ataataatcccgttgcagGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGA
|||||  |||| |||||||||| ||||  | | |||||  ||  |||   |||| |  ||||   |||| | |    ||  ||||||||||||||||| |||||  ||||| | ||| || ||||| || ||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||
gtgaggccttgctcatataacccagtcacttcggaaac--agggtcacgctcttccttaccagttataaaactttttttatagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCTATTGGA

upper sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G144254_T03 (Zea mays), 3'ss of exon 4
gtgagatcttg-------tcatataacctagtctatgccgaaacacagaatcatattctttcagaccaaataataatcccgttgcagGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGA
||||   ||||       |||||||||| ||||| | | |||||  ||   |||  |||| |  ||||  |   | |    ||||||||||||||||||||| |||||  ||||| | ||| || ||||| || ||||||| ||| |||||||||||||||||||| ||||||||||||||||||| 
gtgatgccttgctcttgctcatataacccagtctcttcagaaac--agggccatgctcttccttaccagttctaattttttttgcagGAGTGGAGAAACTATTATTTCAAATAGTTCAAAAAATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCTTATGCTGTTGTATCTGGTGCTATTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688305|gb|CK076992.1|CK076992
EST:     TATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAG                         GAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTG
genomic: TATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAGgtgagatctt ... cccgttgcagGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgccgaaacacagaatcatattctttcagaccaaataataatcccgttgcagGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGA
                                            tcccgtt  CT-rich tract
                                   aaataataat  TA-rich tract