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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttcattgttccttactctcatagttaaaatttcaaatgtatttcgattgaatctttgtgtgctaatttcctagGTGGACACAAATGTTGCACGGATATGCGTGAGGCTTGGATGGGTGCCACTTCAACCCCTTCCGGAGTCTCTTCAACTACACTTGTTGGAACT

Basic information

species Oryza sativa
transcript LOC_Os02g29230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g29230.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G422464_T02 (Zea mays), 3'ss of exon 5
gtaaattttcattgttccttactctcatagt-taaaatttcaaatgtatttcga---ttgaatctttgtgtgctaatttcctagGTGGACACAAATGTTGCACGGATATGCGTGAGGCTTGGATGGGTGCCACTTCAACCCCTTCCGGAGTCTCTTCAACTACACTTGTTGGAACT
    ||  || ||||| || | |||||||   |    | |||| | |||| |      | || || ||| || | ||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||| || || |||||||||||  | ||| | |||||| |
--gtatgctctttgttgctcaatctcataaagttttttctcaagtatattccttattctaaagctctgtatgttgattccctagGTGGACACAAATGTTGGTCGGATATGTGTGAGGCTTGGATGGGTGCCACTTCAACCACTGCCAGAGTCTCTTCAGTTGCACCTCTTGGAAAT

upper sequence: LOC_Os02g29230.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G123587_T01 (Zea mays), 3'ss of exon 5
gtaaattttcattgttccttactctcatagt-taaaatttcaaatgtatttcga---ttgaatctttgtgtgctaatttcctagGTGGACACAAATGTTGCACGGATATGCGTGAGGCTTGGATGGGTGCCACTTCAACCCCTTCCGGAGTCTCTTCAACTACACTTGTTGGAACT
    || ||| ||||  || |  ||| ||   |    |  ||| | |||| |      |||| || ||  || | ||| |||||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||  | || |||||||||||  | ||| | |||||| |
--gtatgttctttgtcgctcaacctcctaaagttttttcccaagtatattccttgttctgaagctctgcatgttcattccctagGTGGACACAAATGTTGGTCGGATATGTGTGAGGCTTGGATGGGTGCCGCTTCAACCATTGCCAGAGTCTCTTCAGTTGCACCTATTGGAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catagttaaaatttcaaatgtatttcgattgaatctttgtgtgctaatttcctagGTGGACACAAATGTTGCACGGATATGCGTGAGGCTTGGATGGGTGCCACTTCAACCCCTTCCGGAGTCTCTTCAACTACACTTGTTGGAACT
                                         tgctaat  putative branch site (score: 2)
                                               tttcct  CT-rich tract
     ttaaaatttcaaatgt  TA-rich tract