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...gcttttctttctattaacaaatatattttcttactactatatgcaatatttttaagcatgaaatcttgtttaaaactttgctaatcttcttggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACAATGTTAGCCAGTTAGTATCTCAGTCCCAGCTGAATAAACTTTTGCCCA
species | Oryza sativa |
transcript | LOC_Os02g27950.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|33658414|gb|CF281027.1|CF281027
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|33797329|gb|CF324527.1|CF324527
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|58674525|gb|CK063212.1|CK063212
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: ACTCACCAGGGCAGGCAACACTAATCCCAAGGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|218478232|gb|FG962363.1|FG962363
genomic: ACTCACCAGGGCAGGCAACACTAATCCCAA-GGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|58689025|gb|CK077712.1|CK077712
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|56157273|gb|D39206.2|D39206
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|218494729|gb|FG965196.1|FG965196
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: C-CTCACCAGGACAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|33675902|gb|CF304141.1|CF304141
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|428890|gb|D25046.1|D25046
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|33658429|gb|CF281042.1|CF281042
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|2310139|gb|C26294.1|C26294
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|218504451|gb|FG953021.1|FG953021
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACEST: gi|218498152|gb|FG965352.1|FG965352
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
EST: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCG GATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
genomic: CACTCACCAGGGCAGGCAACACTAATCCCAAGGCTTTGTTATCAACTGCGgtaagagagc ... tggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAAC
atatttttaagcatgaaatcttgtttaaaactttgctaatcttcttggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACAATGTTAGCCAGTTAGTATCTCAGTCCCAGCTGAATAAACTTTTGCCCA
tgctaat putative branch site (score: 51)
tcttctt CT-rich tract
aaatcttgtttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttttctttctattaacaaatatattttcttactactatatgcaatatttttaagcatgaaatcttgtttaaaactttgctaatcttcttggcacgcagGATGAAGAATCATCTTCCCATTTATTTGGCACTGATTTGCCTGTCACTAACAATGTTAGCCAGTTAGTATCTCAGTCCCAGCTGAATAAACTTTTGCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - atatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaat