1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aggtgtggtttgtaatgcgtacttaaaattatatgaatatagatctgcgttgcctacttgtatcatcttgagtttagatgcctttgatatttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTCTATCTTTCAGCTTTTGATCGCACTAAACAAGCTGAAGAA
species | Oryza sativa |
transcript | LOC_Os02g20410.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGATGCAATAAACAACGGAGCTGTACCTACTATATCATCTTCTTGGCAG AGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTCEST: gi|33678022|gb|CF306261.1|CF306261
genomic: TGGATGCAATAAACAACGGAGCTGTACCTACTATATCATCTTCTTGGCAGgtattgttga ... ttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTC
EST: GGATGCAATAAACAACGGGAGCTGTACCTACTATATCATCTTCTTGGCAG AGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTCEST: gi|29633282|gb|CB638291.1|CB638291
genomic: GGATGCAATAAACAACGG-AGCTGTACCTACTATATCATCTTCTTGGCAGgtattgttga ... ttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTC
EST: TGGATGCAATAAACAACGGAGCTGTACCTACTATATCATCTTCTTGGCAG AGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTCEST: gi|66923900|gb|CX110748.1|CX110748
genomic: TGGATGCAATAAACAACGGAGCTGTACCTACTATATCATCTTCTTGGCAGgtattgttga ... ttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTC
EST: TGGATGCAATAAACAACGGAGCTGTACCTACTATATCATCTTCTTGGCAG AGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTC
genomic: TGGATGCAATAAACAACGGAGCTGTACCTACTATATCATCTTCTTGGCAGgtattgttga ... ttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTC
tgcgttgcctacttgtatcatcttgagtttagatgcctttgatatttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTCTATCTTTCAGCTTTTGATCGCACTAAACAAGCTGAAGAA
atttgac putative branch site (score: 5)
tttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtgtggtttgtaatgcgtacttaaaattatatgaatatagatctgcgttgcctacttgtatcatcttgagtttagatgcctttgatatttgactgcagAGTGTTGAAGAAGCAGAATGCCGTAGAGCATACGATTCTGCTGCAGAGGTCTATCTTTCAGCTTTTGATCGCACTAAACAAGCTGAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - -tgcgtac
- - - - - - - - - - - - - - - - - - - - - - ctgcgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttt