1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatgataatatttgctgtatagttttgcttttatttcatatgccatcatgatatcaattgcttctccttacaacttttgtattattttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAGATTTCCGTTTTATTTGTGGGGGCAAAGCCACATTGCGATGCCTGATCT
species | Oryza sativa |
transcript | LOC_Os02g13990.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86500192|gb|CI142825.1|CI142825
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCCATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86545114|gb|CI185320.1|CI185320
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88227188|gb|CI228301.1|CI228301
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86500747|gb|CI143380.1|CI143380
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86421117|gb|CI057106.1|CI057106
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88223253|gb|CI223102.1|CI223102
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86536011|gb|CI176217.1|CI176217
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86503360|gb|CI145993.1|CI145993
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCCATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|89196166|gb|CI397168.1|CI397168
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88321409|gb|CI535361.1|CI535361
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCTCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88225868|gb|CI225784.1|CI225784
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|55409763|gb|CV722139.1|CV722139
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: CCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|5005007|gb|AU068324.1|AU068324
genomic: CCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88223197|gb|CI223046.1|CI223046
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86426359|gb|CI071456.1|CI071456
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88830705|gb|CI078149.1|CI078149
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88252358|gb|CI350786.1|CI350786
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAACCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|89178382|gb|CI391561.1|CI391561
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86505850|gb|CI148483.1|CI148483
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88460872|gb|CI553008.1|CI553008
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|88450626|gb|CI547126.1|CI547126
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86541745|gb|CI181951.1|CI181951
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86496623|gb|CI139256.1|CI139256
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86540436|gb|CI180642.1|CI180642
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GGTTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|86500143|gb|CI142776.1|CI142776
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCCATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|29663405|gb|CB659680.1|CB659680
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAG GATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAEST: gi|66915896|gb|CX102744.1|CX102744
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
EST: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAATAG GATTGAAGGCATATGCACACCCTGATATAATCTGGCACCAAGTTGGTGTTA
genomic: ATGGGGCGGATGAGAAGAAGCAAAATGAAGAAAGCACCCCAATTGAAGAGgtaatgataa ... attttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTA
tatgccatcatgatatcaattgcttctccttacaacttttgtattattttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAGATTTCCGTTTTATTTGTGGGGGCAAAGCCACATTGCGATGCCTGATCT
tccttac putative branch site (score: 2)
ttattttc putative PPT
ttacaacttttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgataatatttgctgtatagttttgcttttatttcatatgccatcatgatatcaattgcttctccttacaacttttgtattattttcacagGATTGAAGGCATATGCACACACTGATATAATCTGGCACCAAGTTGGTGTTAGATTTCCGTTTTATTTGTGGGGGCAAAGCCACATTGCGATGCCTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG