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...ttgctgtaaatttttgatcctgaaacaattcttgttcattctgttctatgtgttctgtggcaacatgcttcacatgttaataaattctgtgcaatttcagAGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCTATAGTAGCTCGAAGGGCTCTATCAGGCTTATTGATCTGCGGCAATCAGC
species | Oryza sativa |
transcript | LOC_Os02g13110.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTG AGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCTEST: gi|58681896|gb|CK070583.1|CK070583
genomic: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgtaaattttc ... gcaatttcagAGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCT
EST: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTG AGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCTEST: gi|58663865|gb|CK052551.1|CK052551
genomic: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgtaaattttc ... gcaatttcagAGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCT
EST: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTG AGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCTEST: gi|58680356|gb|CK069043.1|CK069043
genomic: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgtaaattttc ... gcaatttcagAGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCT
EST: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTG AGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCT
genomic: AAGCTTTAATATTGTTGATGTGAAGCCTGCAAACATGGAGGACCTAACTGgtaaattttc ... gcaatttcagAGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCT
ctatgtgttctgtggcaacatgcttcacatgttaataaattctgtgcaatttcagAGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCTATAGTAGCTCGAAGGGCTCTATCAGGCTTATTGATCTGCGGCAATCAGC
tgttaat putative branch site (score: 17)
acatgttaataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctgtaaatttttgatcctgaaacaattcttgttcattctgttctatgtgttctgtggcaacatgcttcacatgttaataaattctgtgcaatttcagAGGTGATCACATGCGCGGAGTTCCACCCAACTCATTGTAATACATTAGCCTATAGTAGCTCGAAGGGCTCTATCAGGCTTATTGATCTGCGGCAATCAGC
ttgctgt
- - - - - - - -gatcctg
- - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtta