1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcttcaggaagctgttttgtttgttttcgttgttgatgcttatttttataccgtgttgacagtttattattgtcttgcagGCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGTGACTTGAAATCCCCAAATCTTTTAGTGGATAAAAATTGGGTTGTTAAG
species | Oryza sativa |
transcript | LOC_Os02g12810.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAACAGTCAAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTG GCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGTEST: gi|58594152|gb|CF992460.1|CF992460
genomic: CAAACAGTCAAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTGgtaagcttca ... tgtcttgcagGCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGT
EST: CAAACAGTCCAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTG GCAAAAGGGATGAACTACTTGCATGCTAACCATCCTACTATTGTGCATCGTEST: gi|33793152|gb|CF322457.1|CF322457
genomic: CAAACAGTCAAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTGgtaagcttca ... tgtcttgcagGCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGT
EST: CAAACAGTCAAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTG GCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGTEST: gi|112785946|gb|EE591740.1|EE591740
genomic: CAAACAGTCAAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTGgtaagcttca ... tgtcttgcagGCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGT
EST: CAAACAGTCAAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTG GCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGT
genomic: CAAACAGTCAAATTGATGAAACACGAAGGCTAAAAATGGCATTGGATGTGgtaagcttca ... tgtcttgcagGCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGT
ttcgttgttgatgcttatttttataccgtgttgacagtttattattgtcttgcagGCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGTGACTTGAAATCCCCAAATCTTTTAGTGGATAAAAATTGGGTTGTTAAG
tgttgac putative branch site (score: 3)
ttgtctt putative PPT
atgcttatttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcaggaagctgttttgtttgttttcgttgttgatgcttatttttataccgtgttgacagtttattattgtcttgcagGCAAAAGGGATGAACTACTTGCATGCTAGCCATCCTACTATTGTGCATCGTGACTTGAAATCCCCAAATCTTTTAGTGGATAAAAATTGGGTTGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA