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gttattattttcctctgatgtttcctttttttttttgcagacattgcttttagaaatatcaccatgttcttgtctccatttccacgttaagctgataattttatcagtaggttcaattcattagcttacaatacatacttcataattgtagAGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAGATAAAAGTGGCAAGTACGATAAGTTTAATTGATTTCAGTGCTGATCCTG
species | Oryza sativa |
transcript | LOC_Os02g11820.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCCAAGACCAAATGGAACCAGAACCATCGAACCTCCACCACAGATGCAG AGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAGEST: gi|58686152|gb|CK074839.1|CK074839
genomic: CTCCAAGACCAAATGGAACCAGAACCATCGAACCTCCACCACAGATGCAGgttattattt ... ataattgtagAGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAG
EST: CCAAATGGAACCAGAACCATCGAACCTCCACCACAGATGCAG AGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAGEST: gi|33678055|gb|CF306294.1|CF306294
genomic: CCAAATGGAACCAGAACCATCGAACCTCCACCACAGATGCAGgttattattt ... ataattgtagAGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAG
EST: CTCCAAGACCAAATGGAACCAGAACCATCGAACCTCCACCACAGATGCAG AGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAGEST: gi|29678350|gb|CB674625.1|CB674625
genomic: CTCCAAGACCAAATGGAACCAGAACCATCGAACCTCCACCACAGATGCAGgttattattt ... ataattgtagAGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAG
EST: CACAGATGCAG AGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAG
genomic: CACAGATGCAGgttattattt ... ataattgtagAGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAG
aattttatcagtaggttcaattcattagcttacaatacatacttcataattgtagAGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAGATAAAAGTGGCAAGTACGATAAGTTTAATTGATTTCAGTGCTGATCCTG
agcttac putative branch site (score: 23)
aattcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattattttcctctgatgtttcctttttttttttgcagacattgcttttagaaatatcaccatgttcttgtctccatttccacgttaagctgataattttatcagtaggttcaattcattagcttacaatacatacttcataattgtagAGGACATCAACTGCCAGCAGTATTGGTTCTTCAGAGGGGACCTCCGAACAGATAAAAGTGGCAAGTACGATAAGTTTAATTGATTTCAGTGCTGATCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT