1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cgacaattacttgagtggattcttccatgatttccgcaatggactatgcttttatctttcgtcaatgtaacatgtttccttcctactttgtgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG
species | Oryza sativa |
transcript | LOC_Os02g10310.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAAAGTTTCA GTACCACAGTATCACCNTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29672587|gb|CB668862.1|CB668862
genomic: GAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29612852|gb|CB617865.1|CB617865
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29657905|gb|CB654180.1|CB654180
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29671043|gb|CB667318.1|CB667318
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|163929432|gb|EG713401.1|EG713401
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|117232667|gb|CT861058.1|CT861058
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29637362|gb|CB642371.1|CB642371
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29672144|gb|CB668419.1|CB668419
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|88691997|gb|CI735572.1|CI735572
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29636552|gb|CB641561.1|CB641561
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: GGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|29636597|gb|CB641606.1|CB641606
genomic: GGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|88324389|gb|CI566202.1|CI566202
genomic: CTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGEST: gi|29664840|gb|CB661115.1|CB661115
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGG
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|88690598|gb|CI734677.1|CI734677
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCAEST: gi|27548667|gb|CA766758.2|CA766758
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
EST: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCA GTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
genomic: CCAAGCTTGGGAAACTATACCTCTTGGACCTTTCCTTGGGAAAAGTTTCAgtaagacacc ... tgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCA
atgcttttatctttcgtcaatgtaacatgtttccttcctactttgtgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG
atgtaac putative branch site (score: 3)
tttccttcctactttg putative PPT
tttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgacaattacttgagtggattcttccatgatttccgcaatggactatgcttttatctttcgtcaatgtaacatgtttccttcctactttgtgatttttagGTACCACAGTATCACCCTGGATCGTTACTATGGATGCCCTAAAGCCTTTCACCTGTGAAGCTCCTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC