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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctacaagtattttcttatatagttttttccctatcatttttacttattttcatgccttgttattttacagGCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCTCCCCCTCAAAGATTT

Basic information

species Oryza sativa
transcript LOC_Os02g07960.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G335638_T01 (Zea mays), 3'ss of exon 7
gtaagtctacaagtattttcttatatagttttttccctatcatttt-tacttatttt--catgccttgttattttacagGCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCTCCCCCTCAAAGATTT
|||| ||||||| | ||| ||| |||   |||| |||| | |  || |||||| | |  || |   |  ||||  |||||||||||||||| || |||||||| || |||||| |||||||||||||||||||||||||||| ||
gtaattctacaactgttt-cttctat---ttttaccctcttaccttgtacttactcttccaggatgttctattgcacagGCACATGCAAGATAATCAACTATCTGGTACCCTTAATGTCTTGCAGGATCTCCCCCTCAAAGACTT

upper sequence: LOC_Os02g07960.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G020986_T01 (Zea mays), 3'ss of exon 7
gtaagtctac-aagtattttcttatatagttttttccctatcatttttacttattttcatgccttgttattttac-------agGCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCTCCCCCTCAAAGATTT
|||| |||||  |   ||| ||| |||  ||     | || | | |  |     |||||||   |  ||||  ||       ||||||||||| || || |||||||| || |||||||||||||||||||||||| |||||||||||||
gtaattctactgaccgtttccttttatttttaccctcttaccttgtacatactctttcatgatcttctattgcactttgcacagGCACATGCAGGATAATCAACTATCTGGGACCCTTGATGTCTTGCAGGATCTCTCCCTCAAAGATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatagttttttccctatcatttttacttattttcatgccttgttattttacagGCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCTCCCCCTCAAAGATTT
                                       ccttgtt  CT-rich tract
                tatcatttttacttat  TA-rich tract