1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaaaaatcgtgaagcacgtgtttcatatcgttgaaataatgtatatatacataatgttatttaatacaccaatttttttctgcttttttgtgttctgcagCCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAAT
species | Oryza sativa |
transcript | LOC_Os02g07880.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGATTTTAGCAGACCACCTTTACTACAATAAGTTCGAGCTGTATTGCAAG CCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCEST: gi|427667|gb|D23801.1|D23801
genomic: TGATTTTAGCAGACCACCTTTACTACAATAAGTTCGAGCTGTATTGCAAGgtatgttcct ... tgttctgcagCCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTC
EST: TGTATTGCAAG CCAGCAGAGGGACGCAACTGTATTGNTGATGAGCATTATTTGCCAACCCTCEST: gi|86492716|gb|CI135349.1|CI135349
genomic: TGTATTGCAAGgtatgttcct ... tgttctgcagCCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTC
EST: TGATTTTAGCAGACCACCTTTACTACCATAAGTTCGAGCTGTATTGCAAG CCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTC
genomic: TGATTTTAGCAGACCACCTTTACTACAATAAGTTCGAGCTGTATTGCAAGgtatgttcct ... tgttctgcagCCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTC
tatacataatgttatttaatacaccaatttttttctgcttttttgtgttctgcagCCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAAT
atttaat putative branch site (score: 4)
tttttttctgcttttt putative PPT
ataatgttatttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaatcgtgaagcacgtgtttcatatcgttgaaataatgtatatatacataatgttatttaatacaccaatttttttctgcttttttgtgttctgcagCCAGCAGAGGGACGCAACTGTATTGCTGATGAGCATTATTTGCCAACCCTCTTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
aaaaaat
- - - - -tgaagca
- - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - gaaataa