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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagttgtttttccattatctgttcattcatccagtggtttttttcttcttctcatgattccattcatggtcgctatcttgaacatattcttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG

Basic information

species Oryza sativa
transcript LOC_Os02g07760.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07760.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G128114_T03 (Zea mays), 3'ss of exon 7
---gaagttgtttttccattatctgttcattcatccagtggtttttttcttcttctcatgattc--cattcatggtcgctatcttgaacatattcttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG
    || ||||| | |     ||| || |||     |  | |||| ||||     |  |  ||   |||  ||     || |||||||| |||| | | || ||||| ||| |||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||
gcaaaaattgttgtcc-----tctattaattatctgaaagattttgttctgtgggtgtttctttgtcatcaatttaacctgtcttgaacttattatataattcagGGTGCACTAAATGTTGTGATGGGCAATGCTCCTGAGATAGGTGATGCATTACTGCAGAGTACACAG

upper sequence: LOC_Os02g07760.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G119482_T01 (Zea mays), 3'ss of exon 8
---gaagttgtttttccattatctgttcattcatccagtggtttttttcttcttctcatgattc--cattcatggtcgctatcttgaacatattcttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG
     || |||| |||     ||| ||||||     | || |||| ||||     |  |  ||   |||  ||     || |||||||| |||| | | || ||||| ||| | ||||||||||||||||||||| ||||||||||||||||  | || ||||||||||||
tgcacagatgttcttc-----tctattcattatctgaatgattttgttctgtgggtgtttctttgtcatcaatttaatctgtcttgaacttattatataattcagGGTGCATTGAATGTTGTGATGGGTAATGCTGCTGAGATAGGTGATGCGTTGCTGCAGAGTACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218496520|gb|FG947906.1|FG947906
EST:     TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGC
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGC
EST: gi|218492832|gb|FG951181.1|FG951181
EST:     TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCGA
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|88288968|gb|CI520298.1|CI520298
EST:     TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|218492318|gb|FG946726.1|FG946726
EST:     AGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: AGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|88519470|gb|CI447124.1|CI447124
EST:     TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|218490731|gb|FG966180.1|FG966180
EST:     CTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: CTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|66918914|gb|CX105762.1|CX105762
EST:     GCTCTTC-AGCT-GAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: GCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|218488132|gb|FG951352.1|FG951352
EST:     TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|58694576|gb|CK083263.1|CK083263
EST:     TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: gi|218491346|gb|FG955033.1|FG955033
EST:     TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT                         GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcttctcatgattccattcatggtcgctatcttgaacatattcttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTACTCCAGAGTACACAG
                                          ttcttttatcc  CT-rich tract
                                    aacatattcttttat  TA-rich tract