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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaacagaaatttcttgagtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGAGGCTTCTCCAGGAGGCGTACCAAAGGGGTAGCGCCGATAACATCACCG

Basic information

species Oryza sativa
transcript LOC_Os02g05630.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g05630.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM5G829894_T03 (Zea mays), 3'ss of exon 2
gtaacaacagaaatttcttgagtctccttcacccgcttgtatgttgccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGAGGCTTCTCCAGGAGGCGTACCAAAGGGGTAGCGCCGATAACATCACCG
            |  |   ||   | ||  |     |  |    ||| |||||     | | | ||| ||||  ||| |||  |   |  | | ||||||||||||||||| |||||| | |||||||||||| ||| |  | ||||| || | ||||||| | || |||| || |||||| ||| | |||||||||||||
----------gtacctacagatattgctaaatatattcattcagtgcaattgg-----tctgtctgtcactct-tacctga--cgttatgtatttttccagGAAGCTGTTGCCATGGTCAAGCCTATTCAGGACCCCCAGGAAGCAGCAAACAAGCTTCTCGAAGAAGCGTCCCGAAGGGGAAGCTCTGATAACATCACCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66916002|gb|CX102850.1|CX102850
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|29639786|gb|CB644795.1|CB644795
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGT
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGT
EST: gi|29677669|gb|CB673944.1|CB673944
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|163926798|gb|EG715086.1|EG715086
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|3767442|gb|AU031552.1|AU031552
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|29662048|gb|CB658323.1|CB658323
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|29615476|gb|CB620488.1|CB620488
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|29666985|gb|CB663260.1|CB663260
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|163920197|gb|EG714431.1|EG714431
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|29666852|gb|CB663127.1|CB663127
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|29640127|gb|CB645136.1|CB645136
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGT
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGT
EST: gi|33681625|gb|CF309864.1|CF309864
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|568785|gb|D39634.1|D39634
EST:     AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: AGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
EST: gi|87019102|gb|CI297303.1|CI297303
EST:     CGTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAG                         GAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG
genomic: -GTTCCTCATCCTTGCTAGCGATGGACTTTGGGATGTTGTAAGTAACAAGgtaacaacag ... ctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattggcgccttatatatgttactcaatacatgaaacccaaattctatttccagGAAGCTGTTGACATGGTGAGGCCTATTCAGGATCCCGAACAGGCAGCGAAGAGGCTTCTCCAGGAGGCGTACCAAAGGGGTAGCGCCGATAACATCACCG
                                           ttctatttcc  CT-rich tract
           ttatatatgttact  TA-rich tract