1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgactatgcagcaaagataacgttcctgacattaaatttgactcatgctttgttatttttctgtggaaaatttataatatttgtacattgcctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACT
species | Oryza sativa |
transcript | LOC_Os02g03540.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|88202057|gb|CI202412.1|CI202412
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|86414677|gb|CI069080.1|CI069080
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|88246289|gb|CI246138.1|CI246138
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|29656124|gb|CB652399.1|CB652399
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|86259883|gb|CI065756.1|CI065756
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|29685989|gb|CB682264.1|CB682264
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|86489531|gb|CI132164.1|CI132164
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATEST: gi|29639966|gb|CB644975.1|CB644975
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
EST: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAG CCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
genomic: CAAGAAGGAGCAAGAGAAGTCTATGCATGCTGTACACATGCTGTTTTTAGgtatgctata ... cctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCAT
tgctttgttatttttctgtggaaaatttataatatttgtacattgcctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACT
ttgcctttttc CT-rich tract
ttatttttctgtggaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactatgcagcaaagataacgttcctgacattaaatttgactcatgctttgttatttttctgtggaaaatttataatatttgtacattgcctttttcagCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACACTATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- -ctatgca
- - - - - - aaagataa
- - - - - - - - - - -gttcctg