1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctcattgttgtttctatatttgcattgatattaagagactttcactgcatagattttgagtagtacctttctattcacacttaattgtcatctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG
species | Oryza sativa |
transcript | LOC_Os02g02750.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACA CTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGEST: gi|2431249|gb|C73669.1|C73669
genomic: TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACAgtgagttcat ... atctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGG
EST: TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACA CTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGEST: gi|29646388|gb|CB651395.1|CB651395
genomic: TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACAgtgagttcat ... atctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGG
EST: TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACA CTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGG
genomic: TGGTATTGGTTCATTGCTGCTGTCCCATTTTACTGCGCAACCTGGGAACAgtgagttcat ... atctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGG
ctgcatagattttgagtagtacctttctattcacacttaattgtcatctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG
acttaat putative branch site (score: 39)
tcatctct putative PPT
tagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctcattgttgtttctatatttgcattgatattaagagactttcactgcatagattttgagtagtacctttctattcacacttaattgtcatctctgcagCTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG
- - -ttgttgt
- - - - - - - - - - -tgcattg
- - - - - - - - - - - - - - - - - - - - - -cactgca