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...ttctaaaatctgttattccttatagtgctacacagaactatacatatcttgatgagttactcactgttgctttactcatttcatctattgttaatcatagGCCTTATTTATGCCATATGACCATAAGAATACTACACCAAACGGAGCATCTGCTCATTTGATGAGGACAGTTTTGGAGAATTTGAATCATCGCCATTTCC
species | Oryza sativa |
transcript | LOC_Os02g02710.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAG GCCTTATTTATGCCATATGACCATAAGAATACTACACCAAACGGAGCATCTEST: gi|58685947|gb|CK074634.1|CK074634
genomic: CCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAGgtaagacagg ... ttaatcatagGCCTTATTTATGCCATATGACCATAAGAATACTACACCAAACGGAGCATCT
EST: CCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAG GCCTTATTTATGCCATATGACCATAAGAATACTACACCAAACGGAGCATCT
genomic: CCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAGgtaagacagg ... ttaatcatagGCCTTATTTATGCCATATGACCATAAGAATACTACACCAAACGGAGCATCT
atcttgatgagttactcactgttgctttactcatttcatctattgttaatcatagGCCTTATTTATGCCATATGACCATAAGAATACTACACCAAACGGAGCATCTGCTCATTTGATGAGGACAGTTTTGGAGAATTTGAATCATCGCCATTTCC
tattgttaatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctaaaatctgttattccttatagtgctacacagaactatacatatcttgatgagttactcactgttgctttactcatttcatctattgttaatcatagGCCTTATTTATGCCATATGACCATAAGAATACTACACCAAACGGAGCATCTGCTCATTTGATGAGGACAGTTTTGGAGAATTTGAATCATCGCCATTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA