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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattccagtgcatagctcttgcatcttattctgtgaattaccatgtactatctgaagttgtgaattgatctgcatagagtgtttgcctttattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGCGACTTTCATAATGCATCTGATTCTGAACACTGGGGTTGCATTTAGTTAC

Basic information

species Oryza sativa
transcript LOC_Os02g01710.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88845414|gb|CI084339.1|CI084339
EST:     GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAAT                         ATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
genomic: GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAATgtatgtatgg ... tattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
EST: gi|88558912|gb|CI489444.1|CI489444
EST:     GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAAT                         ATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
genomic: GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAATgtatgtatgg ... tattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
EST: gi|86497902|gb|CI140535.1|CI140535
EST:     GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAAT                         ATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
genomic: GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAATgtatgtatgg ... tattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
EST: gi|86504655|gb|CI147288.1|CI147288
EST:     GACACATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAAT                         ATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
genomic: GAC-CATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAATgtatgtatgg ... tattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
EST: gi|88831540|gb|CI083934.1|CI083934
EST:     GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAAT                         ATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
genomic: GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAATgtatgtatgg ... tattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
EST: gi|86498521|gb|CI141154.1|CI141154
EST:     GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAAT                         ATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
genomic: GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAATgtatgtatgg ... tattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
EST: gi|88841179|gb|CI080633.1|CI080633
EST:     GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAAT                         ATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC
genomic: GGACCATTGATGCATTGCTGACTGCTGAGCTCTGCGTTGGGTTTTATAATgtatgtatgg ... tattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtactatctgaagttgtgaattgatctgcatagagtgtttgcctttattttatagATGCCTTCTTGGAGACCCTCACAAGTCACAACCAGTTCAACTGAAGTGGGCGACTTTCATAATGCATCTGATTCTGAACACTGGGGTTGCATTTAGTTAC
                  aattgat  putative branch site (score: 4)
                                     tttgcctttatttt  putative PPT
                                           tttattttata  TA-rich tract