1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtgcgctatatgcatttcaatatctgaattggccttctgtaagtttagttacttaattgctctacatgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCCAGTTTGTAACTGGTGCTCCTCGGCTTCCGCCTGGTGGTTTAGCTGCCC
species | Oryza sativa |
transcript | LOC_Os02g01170.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|29678536|gb|CB674811.1|CB674811
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|29664291|gb|CB660566.1|CB660566
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|163923587|gb|EG711528.1|EG711528
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|29678538|gb|CB674813.1|CB674813
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|29670955|gb|CB667230.1|CB667230
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|66922255|gb|CX109103.1|CX109103
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|33793172|gb|CF322467.1|CF322467
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|29640685|gb|CB645694.1|CB645694
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: TATAAAA-TTGATCNATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCEST: gi|29628307|gb|CB633318.1|CB633318
genomic: TATAAAATTTGATC-ATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
EST: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAAT CTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
genomic: ATATAAAATTTGATCATGGGTATACTGCTAAAAGTCCTGCAATTGTAAATgtaagtgcgc ... atgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGC
tatctgaattggccttctgtaagtttagttacttaattgctctacatgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCCAGTTTGTAACTGGTGCTCCTCGGCTTCCGCCTGGTGGTTTAGCTGCCC
acttaat putative branch site (score: 29)
tttagttacttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgcgctatatgcatttcaatatctgaattggccttctgtaagtttagttacttaattgctctacatgtttgtagCTACTCGAGATCATGGCTGAATTCACCCCAGAGCAACAACATGCATTCTGCCAGTTTGTAACTGGTGCTCCTCGGCTTCCGCCTGGTGGTTTAGCTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC