1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctgtagatgctcatgcatgtggactaggttgtattcatatctaatttagaaggcgtttgcaccacgcaatatttctatactgatgatccttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG
species | Oryza sativa |
transcript | LOC_Os01g74640.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGAT GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGEST: gi|29682716|gb|CB678991.1|CB678991
genomic: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATgtacggcaaa ... ttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGG
EST: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGAT GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGEST: gi|87026198|gb|CI278322.1|CI278322
genomic: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATgtacggcaaa ... ttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGG
EST: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGAT GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGEST: gi|88474187|gb|CI411458.1|CI411458
genomic: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATgtacggcaaa ... ttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGG
EST: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGAT GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGEST: gi|88509850|gb|CI437356.1|CI437356
genomic: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATgtacggcaaa ... ttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGG
EST: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGAT GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGEST: gi|33684429|gb|CF312668.1|CF312668
genomic: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATgtacggcaaa ... ttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGG
EST: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGAT GGACTTCCTGCTTTTTATAA-GGGTTCATTGCAAACTTTTGCCGCATTEST: gi|86890131|gb|CI321308.1|CI321308
genomic: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATgtacggcaaa ... ttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATT
EST: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGAT GGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGG
genomic: CAACGTACAAGAGTACACTAGACTGTTTTGCAAAGACATTAAAGAATGATgtacggcaaa ... ttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGG
tttagaaggcgtttgcaccacgcaatatttctatactgatgatccttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG
tactgat putative branch site (score: 22)
tccttttctgc putative PPT
aatatttctatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgtagatgctcatgcatgtggactaggttgtattcatatctaatttagaaggcgtttgcaccacgcaatatttctatactgatgatccttttctgcagGGACTTCCTGCTTTTTATAAAGGGTTCATTGCAAACTTTTGCCGCATTGGGTCATGGAATGTGATAATGTTTTTAACACTGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
gctgtag
- - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga