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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgcatttgcattcgcattgctgctccggtgattcacggtgagtgcgcgtgatgacgacgccttctctgccttttgccggtgcagTCGCTGGGGAGCCAGGTGGCGTTCCAGGCGATGGGTTCGATCGCGACGCTGGGGATGTACATCGCGTACGCGCTGCCCGTGTTCTTCCGCGTGACGACGG

Basic information

species Oryza sativa
transcript LOC_Os01g71700.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88997613|gb|CI390256.1|CI390256
EST:     TGGCTCTCACG                         TCGCTGGGGAGCCAGGTGGCGTTCCAGGCGATGGGTTCGATCGCGACGCTG
genomic: TGGCTCTCACGgtgagttgca ... gccggtgcagTCGCTGGGGAGCCAGGTGGCGTTCCAGGCGATGGGTTCGATCGCGACGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcacggtgagtgcgcgtgatgacgacgccttctctgccttttgccggtgcagTCGCTGGGGAGCCAGGTGGCGTTCCAGGCGATGGGTTCGATCGCGACGCTGGGGATGTACATCGCGTACGCGCTGCCCGTGTTCTTCCGCGTGACGACGG
                              ccttctctgccttttg  CT-rich tract