1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgctaactaatactctctctttctgaatatatgtttactatcagtgtagctgtcattttgaagtccatcatgttttaaagactagtcttcatgcttacagGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGC
species | Oryza sativa |
transcript | LOC_Os01g71200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAG GTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGEST: gi|218490465|gb|FG960336.1|FG960336
genomic: TTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGgttagacaca ... atgcttacagGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGG
EST: TTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAG GTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGEST: gi|88762282|gb|CI771838.1|CI771838
genomic: TTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGgttagacaca ... atgcttacagGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGG
EST: TTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAG GTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGG
genomic: TTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGgttagacaca ... atgcttacagGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGG
gtagctgtcattttgaagtccatcatgttttaaagactagtcttcatgcttacagGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGC
tcttcat CT-rich tract
atgttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctaactaatactctctctttctgaatatatgtttactatcagtgtagctgtcattttgaagtccatcatgttttaaagactagtcttcatgcttacagGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGC
- - - - - - - - - ctttctg
- - - - - - - - - - - - - - - - - - - - - - -gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcatgt