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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaacaataactaaagacagcaaacaaatgccatgatttgcacatttgaaatattagaactaacaaagaactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT

Basic information

species Oryza sativa
transcript LOC_Os01g70490.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G084779_T02 (Zea mays), 3'ss of exon 7
gtacaaacaataactaaagacagcaaacaaatgccatgatttgcacatttgaaatattagaactaacaaagaactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
||| ||| | | | || | || ||| | ||| | |||| | || | | | | ||||| || | |||||| ||| ||||| || |||||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||
gtaaggacat--ataagaatcaactaagaaaagacat------taggtttggacgatcaaatt---ctatgaacttatgaactttgttaccagGTCCATTGTACTGGCCAACATTTGTGGTGGCTGTAGCTGCTGCTATAATTGCAAGCCAAGCTATGATATCTGGTGCCTTTGCAATTATTGCTCAGTCCCA---------------------------------

upper sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA19G45260.1 (Glycine max), 3'ss of exon 7
--------------------gtacaa-acaataactaaagacagcaaacaaatgccatgattt--gcacatttgaaatattagaactaacaaaga-actcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
| ||| | || | ||| || | || | || | | || || || | ||| | | | | | |||| | | | |||| || |||||||||||||||||||| || || || || |||||||| || || |||||||| ||||| || || |||||| | || || ||||| |||
gtaagttgtttaattttaaagagcaagatgatcattaacgagtggaagttcgtttgattagtaaagctcaattaatcaattgatttttccccctatattaattgtgaataatg-cagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCT---------------------------------

upper sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 7
gtacaaacaataactaaagacagcaaacaaatgccatgatttgcacatttgaaatattagaactaacaaagaactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
||| || || | || | ||| | || ||| | | || || | | ||| | | || | |||| || || ||||||||||| ||||| ||||| || || |||||||| ||||| ||||| ||||||||||| || ||||| ||||| || | |||||||
gtaaaactcttagc---aggctgcagaaggggatca--attgacgt-ctcaaagagttccttgttttgactaacacttctatat-atgggcagATCCTTTGTATTGGCCAACGTTTGTCGTGGCCGTTGCTGCTGCCATTATTGCTAGCCAAGCTATGATATCAGGAGCATTTGCAATTATCTCGCAGTCCCT---------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
                          attatatt  TA-rich tract