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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaacaataactaaagacagcaaacaaatgccatgatttgcacatttgaaatattagaactaacaaagaactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT

Basic information

species Oryza sativa
transcript LOC_Os01g70490.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G084779_T02 (Zea mays), 3'ss of exon 7
gtacaaacaataactaaagacagcaaacaaatgccatgatttgcacatttgaaatattagaactaacaaagaactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
|||   |||   |  | |  || | || ||| | |||       |  |||| |  || | |     | | ||||| ||   | |||||| |||  ||||| || |||||||||||||||||||| || || ||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||                                 
gtaaggacat--ataagaatcaactaagaaaagacat------taggtttggacgatcaaatt---ctatgaacttatgaactttgttaccagGTCCATTGTACTGGCCAACATTTGTGGTGGCTGTAGCTGCTGCTATAATTGCAAGCCAAGCTATGATATCTGGTGCCTTTGCAATTATTGCTCAGTCCCA---------------------------------

upper sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA19G45260.1 (Glycine max), 3'ss of exon 7
--------------------gtacaa-acaataactaaagacagcaaacaaatgccatgattt--gcacatttgaaatattagaactaacaaaga-actcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
                    |  ||| |  || | ||| ||  | ||     |   || | |   || || || |   |||     |  |    | | | ||||  | |  |  |||| || |||||||||||||||||||| || || || || |||||||| || || |||||||| ||||| || || |||||| | || ||  ||||| |||                                  
gtaagttgtttaattttaaagagcaagatgatcattaacgagtggaagttcgtttgattagtaaagctcaattaatcaattgatttttccccctatattaattgtgaataatg-cagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCT---------------------------------

upper sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 7
gtacaaacaataactaaagacagcaaacaaatgccatgatttgcacatttgaaatattagaactaacaaagaactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
||| ||    || |   || | ||| |       ||  |||  |    |  ||   ||     |    |  ||| | |    ||  |   |||| || || ||||||||||| ||||| ||||| || || |||||||| ||||| ||||| ||||||||||| || ||||| ||||| ||  | |||||||                                  
gtaaaactcttagc---aggctgcagaaggggatca--attgacgt-ctcaaagagttccttgttttgactaacacttctatat-atgggcagATCCTTTGTATTGGCCAACGTTTGTCGTGGCCGTTGCTGCTGCCATTATTGCTAGCCAAGCTATGATATCAGGAGCATTTGCAATTATCTCGCAGTCCCT---------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
                          attatatt  TA-rich tract