1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgctaggaaacattgtagcaggaaatccacactactgccactgctatccttatttgtgcctgcagcaaaattaacacaagcatggtttctgtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGGAGTTCAACTTTGCTGACACTATTCACATATGGGACACACTATTAAGTG
species | Oryza sativa |
transcript | LOC_Os01g68010.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|9866163|gb|AU101913.1|AU101913
genomic: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAgtaagtatgt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|87021285|gb|CI295344.1|CI295344
genomic: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAgtaagtatgt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAA ATTAATCCTCAGTTCTACEST: gi|88981591|gb|CI027202.1|CI027202
genomic: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAgtaagtatgt ... gtttctgcagATTAATCCTCAGTTCTAC
EST: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|88903574|gb|CI089112.1|CI089112
genomic: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAgtaagtatgt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|44674637|gb|CR288071.1|CR288071
genomic: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAgtaagtatgt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: TTCCGAAGTATGATGGAGAGCTTCAGCGTCATTTGGAAATAACAACAGAA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
genomic: TTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAgtaagtatgt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
atccttatttgtgcctgcagcaaaattaacacaagcatggtttctgtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGGAGTTCAACTTTGCTGACACTATTCACATATGGGACACACTATTAAGTG
aattaac putative branch site (score: 2)
tttctgtttct putative PPT
aaaattaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctaggaaacattgtagcaggaaatccacactactgccactgctatccttatttgtgcctgcagcaaaattaacacaagcatggtttctgtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGGAGTTCAACTTTGCTGACACTATTCACATATGGGACACACTATTAAGTG
- - - gaaacat
- - - - - - -tgtagca
- - - - - - - - - - - - -tccacac
- - - - - - - - - - - - - - - - tactgcc
- - - - - - - - - - - - - - - - - - - -actgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcatg