Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctggcactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG

Basic information

species Oryza sativa
transcript LOC_Os01g67134.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G163081_T02 (Zea mays), 3'ss of exon 7
gtgagctggcactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG
                                                                             | ||||   ||| ||||  ||   |     |  |   | || ||   |     || | ||  |||| |    || ||| || ||||              |  |  |||||| |      |||    | || || ||||| || || || | |||   ||||||||||| |||| | ||||||||| |||| |||||||  || ||||| |||||||||||||
----------------------------------------------------------------------------tcgtgattactgtgatatctacatcagggcaaatattggactagaggctg----accgatt--ctcaattgatttaattgttcttct------------gctctttgttatgtcc------cagAACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTACATTAAGAAGGGAGTTGAGGCTGATGAAATAGAAGCGCTGTACAAGAAGG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G815894_T03 (Zea mays), 3'ss of exon 7
gtgagctggcactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG
                                                                                   | | ||  |  |  ||  |  || | |  ||   |  |   ||  ||  |||||   | |       |||||| || ||  ||   |||     || |  | || |   |||  |||    | || || ||||| || ||||| | |||  | ||||||||||||||| | |||||||||||||| ||||||| ||||||||| |||||||||||||
-----------------------------------------------------------------------------------gttagttgtgcttgctgca-tatcacat-catatttca--tttcctttttgtttttgtaaactaatctgatttatactca-attgatttcgttgttattttgatctttatctcccagAACCTCGCTGAAGAGGAGCCAGAGAAGTACCAGTCTCACTTCAGTGAGTACATTAAGAAGGGAATTGAGGCTGATGACATGGAAGCTCTGTACAAGAAGG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G090738_T01 (Zea mays), 3'ss of exon 7
gtgagctggcactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG
                                                                                      | || |  |  ||  |   || |||    ||     |    |  ||   | |    |  | |   || | ||||||||   |   ||  ||            |  | || |||  | |||| || ||||| || ||||| | ||| || |||||||| |||||| |||||||||| ||||| || |||| ||||||||| |||||||||||||
--------------------------------------------------------------------------------------tttagttgtcgctggatagtt-taattttgc--actatccagcgacaactaaaacgaaacggagggagtattattctctatatgatatgata-----------atctattccagAATCTGGCTGACGAGGAGCCCGAGAAGTACCAGGCTCACTTCAGCGAGTACATCAAGAAGGGGATTGAAGCCGATGACATGGAAGCTCTGTACAAGAAGG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G163081_T04 (Zea mays), 3'ss of exon 7
gtgagctggcactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG
                                       |  | |  ||  || ||    |    |||| |   | ||||  | |   |  |  | |||   | ||    | ||||  | |||  |||     |  |||   || |||   |||| | | |    | | ||      |||| ||  |     | |  |||    | || || ||||| || || || | |||   ||||||||||| |||| | ||||||||| |||| |||||||  || ||||| |||||||||||||
---------------------------------------gtgagttgtgcttgctgctgaacacattatttcatttcctttgttccc-tcgtgattactgtgatatctacatcagg--gcaaatattg-----gactag---aggctgaccgattctcaattgatttaatt--gttcttctgctctttgttatgtcccagAACCTTGCTGAAGAGGAGCCAGAAAAGTACCAGAGCCACTTCAGTGCGTACATTAAGAAGGGAGTTGAGGCTGATGAAATAGAAGCGCTGTACAAGAAGG

upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA16G03170.1 (Glycine max), 3'ss of exon 7
gtgagctggcactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG
                                                                                            ||     || |  ||||      |    |   ||   || |||||     | | |  | |||||||   ||  |   |  | ||  | |  ||       || |||||    ||||||| || |||||||||||||  ||  | ||||||||||| ||| |||||   ||||| || |||||||| || || ||||||||||||||||
------------------------------------------------------------------------------------------gcatgagagaagattttat---tttgtaccagttttctgtattgttttatggaatat-ttggatttttcagctagttgttagacaaccttttttt-------tcctgcagATCTTGGCGGAAGATGAACCTGAGAAATATCAGTCACACTTCAGTGAATACATCAAGCGTGGAATAGAAGCTGATGGTATTGAGGCACTGTACAAGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88832601|gb|CI008197.1|CI008197
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86599514|gb|CI251472.1|CI251472
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86421372|gb|CI057361.1|CI057361
EST:     GTGGCTGACTACATGAGG                         TCTATGNCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88985301|gb|CI006955.1|CI006955
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86431233|gb|CI083656.1|CI083656
EST:     GGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|87025457|gb|CI267823.1|CI267823
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86601233|gb|CI251607.1|CI251607
EST:     CAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: CAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|8527480|gb|AU092295.1|AU092295
EST:     ATATTCACCGCAAGTNCATCTNCGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|44667460|gb|CR280894.1|CR280894
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|55409097|gb|CV721473.1|CV721473
EST:     GTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88844409|gb|CI005782.1|CI005782
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86251063|gb|CI014073.1|CI014073
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86526249|gb|CI166455.1|CI166455
EST:     CAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: CAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|33688830|gb|CF317069.1|CF317069
EST:     GCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86824488|gb|CI262994.1|CI262994
EST:     GGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88830073|gb|CI074745.1|CI074745
EST:     ATATTCACCGCAAGTAGATTTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|29657555|gb|CB653830.1|CB653830
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86524642|gb|CI164848.1|CI164848
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|3768108|gb|AU032135.1|AU032135
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86254818|gb|CI061129.1|CI061129
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89195822|gb|CI007241.1|CI007241
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89198595|gb|CI016680.1|CI016680
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86523559|gb|CI163765.1|CI163765
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88976362|gb|CI024579.1|CI024579
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|87034924|gb|CI188727.1|CI188727
EST:     CCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: CCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|58596831|gb|CK007359.1|CK007359
EST:     ATATTCACCGGAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|10611663|gb|AU108407.1|AU108407
EST:     TCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGCG-AATTCCAAGCCCACTTCAGTGAGTAC
genomic: TCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88271593|gb|CI387646.1|CI387646
EST:     CCGCAAATACATCTACGGTGGGCACGTGGCT-ACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGANAAATTCCAAGCCCACTTCAGTGATTAC
genomic: CCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88972122|gb|CI018570.1|CI018570
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|33693283|gb|CF321522.1|CF321522
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88200215|gb|CI200065.1|CI200065
EST:     ATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86254836|gb|CI061147.1|CI061147
EST:     GGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86497579|gb|CI140212.1|CI140212
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89181027|gb|CI045110.1|CI045110
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88218983|gb|CI220543.1|CI220543
EST:     ATTCACCGCAAGTACATTTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88974781|gb|CI023077.1|CI023077
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|109711617|gb|CI013222.1|CI013222
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86599380|gb|CI251338.1|CI251338
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86503931|gb|CI146564.1|CI146564
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86497590|gb|CI140223.1|CI140223
EST:     CACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: CACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88241464|gb|CI241313.1|CI241313
EST:     CACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: CACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89175445|gb|CI042466.1|CI042466
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|33690462|gb|CF318701.1|CF318701
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88984616|gb|CI009393.1|CI009393
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|33664337|gb|CF295304.1|CF295304
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|117251436|gb|CT844165.1|CT844165
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88974220|gb|CI019893.1|CI019893
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86250792|gb|CI007655.1|CI007655
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89194568|gb|CI117005.1|CI117005
EST:     CACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: CACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86851282|gb|CI312683.1|CI312683
EST:     GTATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|88199720|gb|CI199570.1|CI199570
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|58683059|gb|CK071746.1|CK071746
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|86255047|gb|CI017167.1|CI017167
EST:     CGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: CGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89169081|gb|CI020621.1|CI020621
EST:     GGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|3766746|gb|AU030856.1|AU030856
EST:     TACGGTGGCCACNTGGCTGACTACATGAGN                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: TACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89186947|gb|CI053350.1|CI053350
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|33820924|gb|CF336267.1|CF336267
EST:     TGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: TGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|29657556|gb|CB653831.1|CB653831
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|33810870|gb|CF331326.1|CF331326
EST:     ACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|89198487|gb|CI007547.1|CI007547
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|33823172|gb|CF337386.1|CF337386
EST:     GCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: GCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
EST: gi|87032484|gb|CI266124.1|CI266124
EST:     ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG                         TCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 136

TGACAAGAGGTTTGCTGGGTTCAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG
  gcttgat  putative branch site (score: 136)
                                           tacttctt  putative PPT
       atttttattctcatca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagctggcactattagatcaattgttcgtgctattttgacattgctgtgtgttgtattaggagttatgtagctgccttgatgcttgtaatattgactaaaacattataagcaggctggaaaatttgttactgtttagctcagtctgcttgatttttattctcatcagtttaaaatttctacttatgtacttcttgcagTCTATGGCGGAGGAGGAACCTGAGAAATTCCAAGCCCACTTCAGTGAGTACCTCAAGAAGGGAATTGATGCTGATGGCATGGAAGCACTGTACAAGAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG