1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagctggcactattagatcaattgttcgtgctgtgggttgtattaggaattatgtagctgccttgatgtttataacgttgactaaagcattatataaagtttggattatttgttactgtttagctcagtctgctttattttgattgtcatcaggataaattttcttcttatgtacttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACCTCAAGAAGGGAATTGACGCTGATGGCATGGAATCACTGTACAAGAAGG
species | Oryza sativa |
transcript | LOC_Os01g67126.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|27577094|gb|CA999788.1|CA999788
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: CGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|88766068|gb|CI775158.1|CI775158
genomic: CGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|218499062|gb|FG952648.1|FG952648
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|2443100|gb|C74871.1|C74871
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAATACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATNGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGANTACEST: gi|88741629|gb|CI765137.1|CI765137
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|218499324|gb|FG966003.1|FG966003
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|88736334|gb|CI759842.1|CI759842
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|396941604|gb|HO188261.1|HO188261
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|4879230|gb|AU063529.1|AU063529
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|218497228|gb|FG948508.1|FG948508
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACEST: gi|218486091|gb|FG952686.1|FG952686
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
EST: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGG TCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
genomic: ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGgtgagctggc ... cttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTAC
ctgctttattttgattgtcatcaggataaattttcttcttatgtacttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACCTCAAGAAGGGAATTGACGCTGATGGCATGGAATCACTGTACAAGAAGG
ttttgat putative branch site (score: 384)
ataaattttcttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctggcactattagatcaattgttcgtgctgtgggttgtattaggaattatgtagctgccttgatgtttataacgttgactaaagcattatataaagtttggattatttgttactgtttagctcagtctgctttattttgattgtcatcaggataaattttcttcttatgtacttgttgcagTCTATGGCTGAGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACCTCAAGAAGGGAATTGACGCTGATGGCATGGAATCACTGTACAAGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG