1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtccactgtcctatcagttatacatgtagcggtggaaacctgctgtgcttagtgaacaagctcaagttgtgttgtggataactaatatacttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTTGTTACCATCCTTTCTGGGACGTTTCTTCTTCACAAGACGAAAGATATGG
species | Oryza sativa |
transcript | LOC_Os01g65986.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGCAATGTTGTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAG GACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTTEST: gi|86537849|gb|CI178055.1|CI178055
genomic: TACAATGTT-TACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAGgtaacatctt ... ttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTT
EST: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAG GACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTTEST: gi|86493006|gb|CI135639.1|CI135639
genomic: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAGgtaacatctt ... ttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTT
EST: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAG GACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTTEST: gi|86603251|gb|CI112011.1|CI112011
genomic: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAGgtaacatctt ... ttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTT
EST: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAG GACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTTEST: gi|58604427|gb|CK014955.1|CK014955
genomic: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAGgtaacatctt ... ttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTT
EST: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAG GACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTT
genomic: ATACAATGTTTACATCACTAACCATTTTGGCTAGTGTGATAATGTTCAAGgtaacatctt ... ttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTT
tgcttagtgaacaagctcaagttgtgttgtggataactaatatacttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTTGTTACCATCCTTTCTGGGACGTTTCTTCTTCACAAGACGAAAGATATGG
aactaat putative branch site (score: 7)
ataactaatatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccactgtcctatcagttatacatgtagcggtggaaacctgctgtgcttagtgaacaagctcaagttgtgttgtggataactaatatacttgcatgcagGACTGGGATCGTCAAAATCCAACTCAAATTGTGACAGAGATGTGTGGTTTTGTTACCATCCTTTCTGGGACGTTTCTTCTTCACAAGACGAAAGATATGG
- - - - - - - - - -atacatg
- - - - - - - - - - - - - - - - - - - cctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttg