1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaggtttcctgttcaatatacagcttatggtgctttacatgtaggtttcctgttcatttcttatgctgcttttaaactcactcttttggaaaataacataatctcagGGACGGAACATATATGATGGTTGCTGCCAGCTAGACATTCAATATTCTAA
species | Oryza sativa |
transcript | LOC_Os01g64770.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACAATATCAGTCACGTCAAAGTGCAATACAAGCTTATGGTGCTTTACAT GGACGGAACATATATGATGGTTGCTGCCAGCTAGACATTCAATATTCTAAEST: gi|58685647|gb|CK074334.1|CK074334
genomic: TACAATATCAGTCACGTCAAAGTGCAATACAAGCTTATGGTGCTTTACATgtaggtttcc ... ataatctcagGGACGGAACATATATGATGGTTGCTGCCAGCTAGACATTCAATATTCTAA
EST: TACAATATCAGTCACGTCAAAGTGCAATACAAGCTTATGGTGCTTTACAT GGACGGAACATATATGATGGTTGCTGCCAGCTAGACATTCAATATTCTAA
genomic: TACAATATCAGTCACGTCAAAGTGCAATACAAGCTTATGGTGCTTTACATgtaggtttcc ... ataatctcagGGACGGAACATATATGATGGTTGCTGCCAGCTAGACATTCAATATTCTAA
ttcatttcttatgctgcttttaaactcactcttttggaaaataacataatctcagGGACGGAACATATATGATGGTTGCTGCCAGCTAGACATTCAATATTCTAA
aaataac putative branch site (score: 2)
aaaataacataatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtttcctgttcaatatacagcttatggtgctttacatgtaggtttcctgttcatttcttatgctgcttttaaactcactcttttggaaaataacataatctcagGGACGGAACATATATGATGGTTGCTGCCAGCTAGACATTCAATATTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC