1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtgatgaactgtccatcagttcagattttagaacgatatattgagtagtttacagtttacacgtgtaacagcaagatgacatctttgcaagtttgcagGGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTATAACACCAGAACAATCCTTCACCGCCATTGATCATGTGTTTAATAGAAGT
species | Oryza sativa |
transcript | LOC_Os01g64670.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATGAGGTACTTCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCAT GGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTATEST: gi|88206464|gb|CI206313.1|CI206313
genomic: AATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCATgtaagtgatg ... aagtttgcagGGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTAT
EST: AATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCAT GGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTATEST: gi|88250730|gb|CI348960.1|CI348960
genomic: AATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCATgtaagtgatg ... aagtttgcagGGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTAT
EST: AATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCAT GGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTATEST: gi|88252019|gb|CI350447.1|CI350447
genomic: AATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCATgtaagtgatg ... aagtttgcagGGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTAT
EST: AATGA-GTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCAT GGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTAT
genomic: AATGAGGTACTGCCTGTGACCGCTGCTCGGGATGCCATCCAGTATTCCATgtaagtgatg ... aagtttgcagGGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTAT
agtagtttacagtttacacgtgtaacagcaagatgacatctttgcaagtttgcagGGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTATAACACCAGAACAATCCTTCACCGCCATTGATCATGTGTTTAATAGAAGT
gtgtaac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatgaactgtccatcagttcagattttagaacgatatattgagtagtttacagtttacacgtgtaacagcaagatgacatctttgcaagtttgcagGGATCTGTATGCTCAGTACATTGAGCACTTGGGGCAGTAGACCAGTAGTATAACACCAGAACAATCCTTCACCGCCATTGATCATGTGTTTAATAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT