Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaatatgttcactcgttgcttttgttatgcactttattctgtcagaattaagtgtttaatcgatgattttttattcacagGAATGTCAAATACAGCTGGAACATTTGCTGCCATTTTAGGAACTGTTGGAGCAGGTTTCTTTGTCGATCGGATGGGTTCTTTCCGTGGATTTTTAATATT

Basic information

species Oryza sativa
transcript LOC_Os01g63290.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63290.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM5G856598_T02 (Zea mays), 3'ss of exon 7
---gtaataaatatgttcactcgttgcttttgtta-tgcacttt-attctgtcagaattaagtg--tttaatcgatgattttttattcacagGAATGTCAAATACAGCTGGAACATTTGCTGCCATTTTAGGAACTGTTGGAGCAGGTTTCTTTGTCGATCGGATGGGTTCTTTCCGTGGATTTTTAATATT
    |||  | ||  |   ||| |||  || | || |  | ||  ||| |||  | ||||| |   ||| ||| |  ||| |    | ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| || ||||| ||| ||||||||||||||||||||||||| |||||
gtactaactagtaaatatgctccttgtgttagctaatatatttccattttgtt-gcattaactaactttgatctacaattgtgctgtgacagGAATGTCAAATACAGCTGGGACATTTGCTGCCATTCTAGGAACTATTGGAGCAGGGTTTTTTGTTGATAGGATGGGTTCTTTCCGTGGATTTTTGATATT

upper sequence: LOC_Os01g63290.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA02G38930.1 (Glycine max), 3'ss of exon 8
----------gtaataaatat-----gttcactcgttgcttttgttatgcactttattctgtcagaattaa--gtgtttaatcgatgattttttattcacagGAATGTCAAATACAGCTGGAACATTTGCTGCCATTTTAGGAACTGTTGGAGCAGGTTTCTTTGTCGATCGGATGGGTTCTTTCCGTGGATTTTTAATATT
          |||| || |       ||| |     | ||| |  |||| ||||||   |   |    | |   ||   |     |||||| || |||  |||||| |||||||| ||||||||||| ||||| || || ||||| |||||||| ||  | ||||| || |   | ||||| ||||  |||||| |  |  |
tgagatataagtaaaaactgctaggagttgagaaaatacttgt-ctatgtactttacaataagatctcttataatgaagacctcttgatttctttttc-tagGAATATCAAATACTGCTGGAACATTGGCTGCTATATTTGGAACAGTTGGAGCTGGGCTTTTTGTTGAGCTAGTTGGTTCCTTCCCAGGATTTCTGTTGCT

upper sequence: LOC_Os01g63290.2 (Oryza sativa), 3'ss of exon 7
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 3'ss of exon 7
--------gtaataaatatgttcactcgttgc-ttttgttatgcactttattctgtcagaattaagtgtttaatcgatgattttttattc------acagGAATGTCAAATACAGCTGGAACATTTGCTGCCATTTTAGGAACTGTTGGAGCAGGTTTCTTTGTCGATCGGATGGGTTCTTTCCGTGGATTTTTAATATT
         | ||   | |  | | |    |     |  |     | | |  |  | |  | ||| |    | | | | | ||| |||||      |||||| |||||||||| ||||||||||||||||||||| |||||||  ||||||| ||||||||||| || |   ||||||||||||  |||||| |  || |
cttagtatatgatggctgttcttatttccagaaccctactgaaaccatcagacaatgactagtaatttccaagttgctaaatttgtattcgtgctgacagGATTGTCAAATACGGCTGGAACATTTGCTGCCATTGTAGGAACAATTGGAGCTGGTTTCTTTGTTGAACTTGTGGGTTCTTTCCAAGGATTTCTGTTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcactttattctgtcagaattaagtgtttaatcgatgattttttattcacagGAATGTCAAATACAGCTGGAACATTTGCTGCCATTTTAGGAACTGTTGGAGCAGGTTTCTTTGTCGATCGGATGGGTTCTTTCCGTGGATTTTTAATATT
                            gtttaat  putative branch site (score: 4)
                                         ttttttattc  putative PPT
                             tttaatcgatgatttt  TA-rich tract