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...gtatatattagatttttcccccattttgaaacctatgagtaggagcaacaaaagttctgttgcactagtgctcttaattattgtataatttattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTATCCTGGGAGTCAAGATGCAAGACATTGGTGCAGGGCTGTGGCACACTG
species | Oryza sativa |
transcript | LOC_Os01g62810.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAACAGATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTEST: gi|29617734|gb|CB622746.1|CB622746
genomic: TAACAGATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
EST: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTEST: gi|29617735|gb|CB622747.1|CB622747
genomic: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
EST: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTEST: gi|29664301|gb|CB660576.1|CB660576
genomic: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
EST: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTEST: gi|29677605|gb|CB673880.1|CB673880
genomic: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
EST: ATTCAGGACCACTACTTACATTTGGATGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAAGCGTGTGTATCGTCEST: gi|86496172|gb|CI138805.1|CI138805
genomic: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAA-CGTGTGTATCGTC
EST: TGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTEST: gi|29670637|gb|CB666912.1|CB666912
genomic: TGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
EST: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTEST: gi|86900111|gb|CI300166.1|CI300166
genomic: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
EST: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAG TGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
genomic: ATTCAGGAGCACTACTTACATTTGGATGGGGACTGTACGGACAGgttagtgctt ... tattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCT
caacaaaagttctgttgcactagtgctcttaattattgtataatttattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTATCCTGGGAGTCAAGATGCAAGACATTGGTGCAGGGCTGTGGCACACTG
tcttaat putative branch site (score: 13)
tttattcttc putative PPT
tcttaattattgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatattagatttttcccccattttgaaacctatgagtaggagcaacaaaagttctgttgcactagtgctcttaattattgtataatttattcttcagTGTGGACAAGGAAACACAGATGATGTTTTAAGTCCAACGTGTGTATCGTCTATCCTGGGAGTCAAGATGCAAGACATTGGTGCAGGGCTGTGGCACACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - aaaccta
- - - - - - - - - - - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctagtgc