1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttcatccctaattagaatcaattggtcatccatattactctaataccttcttttaagtgatcatatgtattgatgacatcccatttacaattgcgcagCATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTGTCATTATTGAAAAACTAGCTGGGCAGATCATTCAGATGAGCCAACAGAAATTTGCCTCAAATG
species | Oryza sativa |
transcript | LOC_Os01g62650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGATCAATATGGAAATTATGTTGTTCAG CATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTATCATTATTGAAAAAEST: gi|29622762|gb|CB627773.1|CB627773
genomic: AAGATCAATATGGAAATTATGTTGTTCAGgtttgtatcc ... aattgcgcagCATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTGTCATTATTGAAAAA
EST: GATCAATATGGAAATTATGTTGTTCAG CATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTATCATTATTGAAAAA
genomic: GATCAATATGGAAATTATGTTGTTCAGgtttgtatcc ... aattgcgcagCATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTGTCATTATTGAAAAA
taccttcttttaagtgatcatatgtattgatgacatcccatttacaattgcgcagCATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTGTCATTATTGAAAAACTAGCTGGGCAGATCATTCAGATGAGCCAACAGAAATTTGCCTCAAATG
tattgat putative branch site (score: 3)
atttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcatccctaattagaatcaattggtcatccatattactctaataccttcttttaagtgatcatatgtattgatgacatcccatttacaattgcgcagCATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTGTCATTATTGAAAAACTAGCTGGGCAGATCATTCAGATGAGCCAACAGAAATTTGCCTCAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG