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...tgcatataggagcattccacaccatatttttatacatagatatttttatagttccttctgggatctgagcatattattcactgagctgaatcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
species | Oryza sativa |
transcript | LOC_Os01g59600.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATAGGGATGGGCCACAGCTCT-TATGATCGAACCCTCAGGAGTCTCATAC CAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|88976521|gb|CI024666.1|CI024666
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC GAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|27576784|gb|CA999478.1|CA999478
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGEST: gi|86597380|gb|CI280517.1|CI280517
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGG
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|86841716|gb|CI337401.1|CI337401
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|29668732|gb|CB665007.1|CB665007
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|86836032|gb|CI346125.1|CI346125
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|163920473|gb|EG709578.1|EG709578
genomic: ACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: TAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|8859855|gb|AU097173.1|AU097173
genomic: TAGGGATGGGCCACAGCTCTACATGATCGAACCCTCA-GGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|8856768|gb|AU094086.1|AU094086
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGNTGGGCCACAGCTCTACATGANCGAACCCTCAGGNGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|33686717|gb|CF314956.1|CF314956
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: CATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|29668731|gb|CB665006.1|CB665006
genomic: CATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|86543850|gb|CI184056.1|CI184056
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|33692106|gb|CF320345.1|CF320345
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|86890281|gb|CI321458.1|CI321458
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: CTCTACATGATCGAACCCTCAGGAGTCTCAAAC AAATACTTT-GTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|86545852|gb|CI186058.1|CI186058
genomic: CTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|88694188|gb|CI738226.1|CI738226
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAEST: gi|88250600|gb|CI348830.1|CI348830
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAA
EST: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAACEST: gi|86870489|gb|CI320585.1|CI320585
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
EST: ATA-GGATGGCCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATAC AAATACTTTGGTGCTGCTCTGGGTAAA-GAAGACAGGCTGCAAAAAC
genomic: ATAGGGATGGGCCACAGCTCTACATGATCGAACCCTCAGGAGTCTCATACgtaagctaac ... tcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
ttatagttccttctgggatctgagcatattattcactgagctgaatcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
atattattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatataggagcattccacaccatatttttatacatagatatttttatagttccttctgggatctgagcatattattcactgagctgaatcctgaacagAAATACTTTGGTGCTGCTCTGGGTAAAGGAAGACAGGCTGCAAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
tgcatat
- - - - - -gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctgaa