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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaaatttcctgtagtctgcaatgtctatcagaacatgatgctttggtactatattgtatcgtagtctaagtgccagaatttaaattgccaatatttcagGGATCAATTCTTTCAAGTTCTTCATGGCGTATAAAGGTTCATTGATGGTCACGGATGACCTACTCCTGCAAGGCTTACAGAAATGCAAATCTCTTGGTGC

Basic information

species Oryza sativa
transcript LOC_Os01g59340.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59340.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G020002_T03 (Zea mays), 3'ss of exon 4
---gcaaatttcctgta-gtctgcaatgtctatcagaacatgatgctttggtactatattgtatcgtagtctaagtgccagaatttaaattgccaatatttcagGGATCAATTCTTTCAAGTTCTTCATGGCGTATAAAGGTTCATTGATGGTCACGGATGACCTACTCCTGCAAGGCTTACAGAAATGCAAATCTCTTGGTGC
   |  |  ||  || | | ||||| ||  | | |||   ||| |  | | | ||||    ||||    | ||  |     |||  |||||  | | ||| ||||||| |||||||||||||| |||||||| |||||||| || |||||||| || |||||||| |||||||||||| ||| ||||||||| || ||||||||
tttgatagcttggtgcatgactgca-tggtttttagattttgaag--tagatcctattaaatatcaatttatatcttattaaatacaaatt-tcgaaattgcagGGATAAATTCTTTCAAGTTTTTCATGGCATATAAAGGCTCCTTGATGGTTACTGATGACCTCCTCCTGCAAGGCCTACGGAAATGCAAGTCGCTTGGTGC

upper sequence: LOC_Os01g59340.3 (Oryza sativa), 3'ss of exon 7
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 3'ss of exon 4
gcaaatttcctgtagtctgcaatgtctat----cagaacat-gatgctttggtac---tatattgtatcgtagtctaagtgccagaatttaaattgccaatattt-cagGGATCAATTCTTTCAAGTTCTTCATGGCGTATAAAGGTTCATTGATGGTCACGGATGACCTACTCCTGCAAGGCTTACAGAAATGCAAATCTCTTGGTGC
| |||| || |||  | ||  |  |  ||    || |   | | || ||   | |   ||  ||   |  ||   | |     ||    || ||  | ||  |||  ||| ||||| ||||||||||| ||| | ||||||||||| ||  | ||||| || ||||||||||||||  ||||  |  | | ||||||||| || |||||
gtaaatgtcttgtcttgtgacacattgatgcctcacagttttggtgtttctatccctttagtttccctgctaagatgaaactgagtgcatatatctctaaattttgtagGTATCAACTCTTTCAAGTTTTTCCTAGCGTATAAAGGATCTCTTATGGTAACTGATGACCTACTCCTAGAAGGACTTAAAAGATGCAAATCCCTCGGTGC

upper sequence: LOC_Os01g59340.3 (Oryza sativa), 3'ss of exon 7
lower sequence: PP1S101_168V6.1 (Physcomitrella patens), 3'ss of exon 4
--gcaa--atttcctgtagtctgcaatgtcta---tcagaacatgatg-ctttggtactatattgtatcgtagtctaagtgccagaatttaaattgccaatatttcagGGATCAATTCTTTCAAGTTCTTCATGGCGTATAAAGGTTCATTGATGGTCACGGATGACCTACTCCTGCAAGGCTTACAGAAATGCAAATCTCTTGGTGC
  | ||  ||  | |||  || || | |  |    |  |||  ||| | |  |  || |   ||| |||    ||||  | |  ||  |||  |   |  ||   |||||||||| || ||||||||||||||||| || || || |||||||||||  |||||||   | |  | || |||||  ||||||| ||    ||||| ||
tcgtaaccatggcttgtgttcagctaggcttggggtttgaatgtgaagaccgttatatttgcttgaatct---tctatttacatga--ttatgtcatctgta---cagGGATCAACTCCTTCAAGTTCTTCATGGCTTACAAGGGCTCATTGATGGTTTCGGATGAGGAAATTATTCAGGGCTTTAAGAAATGTAAGGAACTTGGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtactatattgtatcgtagtctaagtgccagaatttaaattgccaatatttcagGGATCAATTCTTTCAAGTTCTTCATGGCGTATAAAGGTTCATTGATGGTCACGGATGACCTACTCCTGCAAGGCTTACAGAAATGCAAATCTCTTGGTGC
                              agaatttaaatt  TA-rich tract