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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgcttcattagttttggttgtttatcctctgaacactaatttagttcttatcgccagtctgttattctttgttaaactcactgattgtcacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATG

Basic information

species Oryza sativa
transcript LOC_Os01g56670.4
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56670.3 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 7
catgcttcattagttttggttgtttatcctctgaacactaattt-agttcttatcgccagtctgttattctttg---ttaaactcactgattgtcacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATG
 |||  ||||   |         ||  |||||||||| | |||| ||| || ||      | |||| | |  |    || || ||    | | |     |||||||| ||| |||||||||||||| || ||||||||||||||| ||||||| || |||||  | ||||||||||||||||||||||| ||||||||||||||
tatgtatcatacttaaacaaaagttggcctctgaacagtgattttagtactcattatttatttgttgtaccataattttgaagtcctctactttt----tgcagTTTTTGAGCGAGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88361880|gb|CI682051.1|CI682051
EST:     AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCG                         TTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGT
genomic: AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattg ... cacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGT
EST: gi|88394177|gb|CI684850.1|CI684850
EST:     AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCG                         TTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGT
genomic: AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattg ... cacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGT
EST: gi|29678673|gb|CB674948.1|CB674948
EST:     CACTTTGACACTGGAATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCG                         TTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCA
genomic: CACTTTGACACTGGAATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattg ... cacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttatcgccagtctgttattctttgttaaactcactgattgtcacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATG
                  ttattctttgttaaa  TA-rich tract