1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...catgcttcattagttttggttgtttatcctctgaacactaatttagttcttatcgccagtctgttattctttgttaaactcactgattgtcacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATG
species | Oryza sativa |
transcript | LOC_Os01g56670.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCG TTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTEST: gi|88394177|gb|CI684850.1|CI684850
genomic: AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattg ... cacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGT
EST: AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCG TTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTEST: gi|29678673|gb|CB674948.1|CB674948
genomic: AATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattg ... cacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGT
EST: CACTTTGACACTGGAATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCG TTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCA
genomic: CACTTTGACACTGGAATTTGGTGTCCTGAGTCGTTTGACTAATGATAGCGgttagtattg ... cacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCA
gttcttatcgccagtctgttattctttgttaaactcactgattgtcacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATG
ttattctttgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgcttcattagttttggttgtttatcctctgaacactaatttagttcttatcgccagtctgttattctttgttaaactcactgattgtcacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATG
- tgcttca
- - - - - - - - - gttgttt
- - - - - - - - - - - - - - - ctgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg