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gtatgacagccaaagcaagagtcttgttattactcatcccttgctgatatgaagaaaattaacaaatgtgatgcaacattctcagGTATTTCTAAATTATTACAATGAGTCCCTTGTGAGAGATGAGACCTCAAACAAAATCGTCAGCTTTGGTGCAATTGCAAAAATACTAGGAGGCCAAAATC
species | Oryza sativa |
transcript | LOC_Os01g56320.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCCAATGGATATGCCTGGACTTATAATACCATCATCTGATGACTCTAAG GTATTTCTAAATTATTACAATGAGTCCCTTGTGAGAGATGAGACCTCAAACEST: gi|58661572|gb|CK050252.1|CK050252
genomic: CTCCAATGGATATGCCTGGACTTATAATACCATCATCTGATGACTCTAAGgtatgacagc ... acattctcagGTATTTCTAAATTATTACAATGAGTCCCTTGTGAGAGATGAGACCTCAAAC
EST: CTCCAATGGATATGCCTGGACTTATAATACCATCATCTGATGACTCTAAG GTATTTCTAAATTATTACAATGAGTCCCTTGTGAGAGATGAGACCTCAAAC
genomic: CTCCAATGGATATGCCTGGACTTATAATACCATCATCTGATGACTCTAAGgtatgacagc ... acattctcagGTATTTCTAAATTATTACAATGAGTCCCTTGTGAGAGATGAGACCTCAAAC
tactcatcccttgctgatatgaagaaaattaacaaatgtgatgcaacattctcagGTATTTCTAAATTATTACAATGAGTCCCTTGTGAGAGATGAGACCTCAAACAAAATCGTCAGCTTTGGTGCAATTGCAAAAATACTAGGAGGCCAAAATC
aattaac putative branch site (score: 6)
cattctc putative PPT
atatgaagaaaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacagccaaagcaagagtcttgttattactcatcccttgctgatatgaagaaaattaacaaatgtgatgcaacattctcagGTATTTCTAAATTATTACAATGAGTCCCTTGTGAGAGATGAGACCTCAAACAAAATCGTCAGCTTTGGTGCAATTGCAAAAATACTAGGAGGCCAAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT