1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatctgtctttctagattctattgatcagctcgctatctccatgtcttctttaacaacaaaagaaatgtcatgtctttgctgatgaacttggtttcttttcctacatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAGCTGTCACTAAGCAACATATGGCAGTTCTAGTCCAAGCAAACATGAGTTT
species | Oryza sativa |
transcript | LOC_Os01g56270.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAG GTGGCATCAGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAGEST: gi|86413930|gb|CI068137.1|CI068137
genomic: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGgtatctgtct ... acatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
EST: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAG GTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAGEST: gi|89195388|gb|CI051501.1|CI051501
genomic: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGgtatctgtct ... acatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
EST: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAG GTGGCATCAGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
genomic: TTTCAGGTCCATTATTTTGATGCAGACGCAGTTACATTGGCAAGgtatctgtct ... acatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAG
aaaagaaatgtcatgtctttgctgatgaacttggtttcttttcctacatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAGCTGTCACTAAGCAACATATGGCAGTTCTAGTCCAAGCAAACATGAGTTT
tgctgat putative branch site (score: 3)
tttcttttcctacat putative PPT
tttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctgtctttctagattctattgatcagctcgctatctccatgtcttctttaacaacaaaagaaatgtcatgtctttgctgatgaacttggtttcttttcctacatggccagGTGGCATCGGGGTGTTACTGTTTCTTTCGGCAAGCGAAAGTGAACAAGCAGCTGTCACTAAGCAACATATGGCAGTTCTAGTCCAAGCAAACATGAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA