1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtttagttgtcctactgaaagatagttcttcagttgatccttttggataattttattcttcagttagtgtgtgtgtgctaacaatagggacttgctccagGATTAAGATCCCTTTTCCACTACAATGGGGCGCACCAACTTTCAGTGCCGGTCAATCCTTTGGTATGGTATCTGCTGTTCTGGTATCGCTAGTAGAG
species | Oryza sativa |
transcript | LOC_Os01g55500.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAGATCAACTGCCGCACTGACCGTGCCAATCTCATCTCTTCCGCGCCATG GATTAAGATCCCTTTTCCACTACAATGGGGCGCACCAACTTTCAGTGCCGGEST: gi|58599082|gb|CK009610.1|CK009610
genomic: CAGATCAACTGCCGCACTGACCGTGCCAATCTCATCTCTTCCGCGCCATGgtttgtctct ... cttgctccagGATTAAGATCCCTTTTCCACTACAATGGGGCGCACCAACTTTCAGTGCCGG
EST: CAGATCAACTGCCGCACTGACCGTGCCAATCTCATCTCTTCCGCGCCATG GATTAAGATCCCTTTTCCACTACAATGGGGCGCACCAACTTTCAGTGCCGG
genomic: CAGATCAACTGCCGCACTGACCGTGCCAATCTCATCTCTTCCGCGCCATGgtttgtctct ... cttgctccagGATTAAGATCCCTTTTCCACTACAATGGGGCGCACCAACTTTCAGTGCCGG
gataattttattcttcagttagtgtgtgtgtgctaacaatagggacttgctccagGATTAAGATCCCTTTTCCACTACAATGGGGCGCACCAACTTTCAGTGCCGGTCAATCCTTTGGTATGGTATCTGCTGTTCTGGTATCGCTAGTAGAG
tgctaac putative branch site (score: 1)
cttgctcc putative PPT
ttttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttagttgtcctactgaaagatagttcttcagttgatccttttggataattttattcttcagttagtgtgtgtgtgctaacaatagggacttgctccagGATTAAGATCCCTTTTCCACTACAATGGGGCGCACCAACTTTCAGTGCCGGTCAATCCTTTGGTATGGTATCTGCTGTTCTGGTATCGCTAGTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT