1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagttcccttatctcacatttaatggcccatttgattcccagcgtatgaatacatcttaaagattgttgtttatgtgtgatcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAG
species | Oryza sativa |
transcript | LOC_Os01g55170.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGEST: gi|33794161|gb|CF322971.1|CF322971
genomic: GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
EST: GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGEST: gi|29673355|gb|CB669630.1|CB669630
genomic: GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
EST: CATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGEST: gi|86898803|gb|CI296092.1|CI296092
genomic: CATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
EST: GAAACAGCAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGEST: gi|29682355|gb|CB678630.1|CB678630
genomic: GAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
EST: CAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGEST: gi|29640595|gb|CB645604.1|CB645604
genomic: CAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
EST: GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGEST: gi|38480080|gb|CF964169.1|CF964169
genomic: GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
EST: TGCAGGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGEST: gi|7378454|gb|AU088725.1|AU088725
genomic: TGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
EST: GTGCATCCTCTTGTTGAATATGAAACAGCAGAGGCANCTGAGAAAGCT GCTATCNACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGEST: gi|58687646|gb|CK076333.1|CK076333
genomic: GTGCATGCTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATC-ACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAG
EST: CTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCT GCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
genomic: CTCTTGTTGAATATGAAACAGCAGAGGCAGCTGAGAAAGCTgtgagttccc ... atcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGG
attcccagcgtatgaatacatcttaaagattgttgtttatgtgtgatcaaattagGCTATCACCTTAAACGATGGGAGCAATTGGAGGACTGGAATGAAAGTCAGGCTGGCTAAGCGAACCGTAGGATCAGGAAAGCATAACCAGTCTTCAAAAG
atttgat putative branch site (score: 32)
ttaaagatt TA-rich tract