1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcgtggttagtagatgctagccttttaaatttgtgtgcttgtccagtacacgtgagttttgtccttccctgatatgtgtactccaacttatgcaatgcagTCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGACGATAGATTCATGGACATGTTCGTGGCACCTGGTGCTGTTGATGCTATC
species | Oryza sativa |
transcript | LOC_Os01g54420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTGAAAGGAATGTACCCTCTGCACTGAACTCTGGATTCTTGACCCCATG TCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGAEST: gi|87022800|gb|CI269736.1|CI269736
genomic: ATTGAAAGGAATGTACCCTCTGCACTGAACTCTGGATTCTTGACCCCATGgtatgcctga ... tgcaatgcagTCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGA
EST: ATTGAAAGGAATGTACCCTCTGCACTGAACTCTGGATTCTTGACCCCATG TCGTGAGCGGTTGTTTTTGGCACTTGGTTTCGAGCTGTTTGCTGTTAATGAEST: gi|86480578|gb|CI123211.1|CI123211
genomic: ATTGAAAGGAATGTACCCTCTGCACTGAACTCTGGATTCTTGACCCCATGgtatgcctga ... tgcaatgcagTCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGA
EST: ATTGAAAGGAATGTACCCTCTGCACTGAACTCTGGATTCTTGACCCCATG TCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGA
genomic: ATTGAAAGGAATGTACCCTCTGCACTGAACTCTGGATTCTTGACCCCATGgtatgcctga ... tgcaatgcagTCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGA
gtacacgtgagttttgtccttccctgatatgtgtactccaacttatgcaatgcagTCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGACGATAGATTCATGGACATGTTCGTGGCACCTGGTGCTGTTGATGCTATC
ccctgat putative branch site (score: 1)
aacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtggttagtagatgctagccttttaaatttgtgtgcttgtccagtacacgtgagttttgtccttccctgatatgtgtactccaacttatgcaatgcagTCGTGAGCGGTTGTTTTTGGCACTTGGCTTCGAGCTGTTTGCTGTTAATGACGATAGATTCATGGACATGTTCGTGGCACCTGGTGCTGTTGATGCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - tgctagc
- - - - - - - - - - - - - - - - - gtgcttg