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gtatgttgaattccacattcttgtcaatgtttcaaaaaattaagttgacttcttgtgccaatttcttaacattagcgtgatgctttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCAACAGTATCTACAACCATTCTGGTCTTTTTGGAATTCATGCAACAACT
species | Oryza sativa |
transcript | LOC_Os01g53700.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCTTTCTCTGCTGGCGGCTCCTGGGAAGGGCCATGCATTCTCGATTGT ATCTCCGGATATTAAACAACTACCATCACATCGAGCCATTCTCTGCATTCAEST: gi|27577068|gb|CA999762.1|CA999762
genomic: GTTCTTTCTCTGCTGGTGG-TCCTGGGAAGGGC-ATGCATTCTCGATTGTgtatgttgaa ... ttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
EST: TGG-TCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGT ATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCAEST: gi|38475250|gb|CF959383.1|CF959383
genomic: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGTgtatgttgaa ... ttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
EST: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGT ATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCAEST: gi|9864980|gb|AU100730.1|AU100730
genomic: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGTgtatgttgaa ... ttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
EST: ATGCATTTCTCGATTGT ATCCCCCGGATATTAAAACAACTACCCATCAGATCGAGTCATTCTCTGCATEST: gi|58690219|gb|CK078906.1|CK078906
genomic: ATGCA-TTCTCGATTGTgtatgttgaa ... ttatttacagAT-CTCCGGATATT-AAACAACTA-CCATCAGATCGAGTCATTCTCTGCAT
EST: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGT ATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCAEST: gi|300215819|gb|HO088445.1|HO088445
genomic: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGTgtatgttgaa ... ttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
EST: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGT ATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCAEST: gi|2311057|gb|C27212.1|C27212
genomic: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGTgtatgttgaa ... ttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
EST: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGT ATCTCCGGATATTAAACANCTACCATCAGATCGAGTCATTCTCTGCATTCAEST: gi|163920798|gb|EG710061.1|EG710061
genomic: TGGTTCTTTCTCTGCTGGTGGTCCTGGGAAGGGCATGCATTCTCGATTGTgtatgttgaa ... ttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
EST: AAGGGCATGCATTCTCGATTGT ATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
genomic: AAGGGCATGCATTCTCGATTGTgtatgttgaa ... ttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCA
ttaagttgacttcttgtgccaatttcttaacattagcgtgatgctttatttacagATCTCCGGATATTAAACAACTACCATCAGATCGAGTCATTCTCTGCATTCAACAGTATCTACAACCATTCTGGTCTTTTTGGAATTCATGCAACAACT
tcttaac putative branch site (score: 31)
ctttattt putative PPT
aatttcttaacatta TA-rich tract