1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatttcaattcgaagttgaaagatatggtttttgatgatacgacagcacttgtcctttctttcagATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCAAAGATGGAAATGAACCCTGCTCGTGTTGTGGGAATGTCTCTATCCGTAA
species | Oryza sativa |
transcript | LOC_Os01g52720.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGTGGCAAGCCTTTGTGTACTTACCCCAGGACAGATGGCAAATCATGAAG ATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCAEST: gi|86889492|gb|CI317292.1|CI317292
genomic: CGTGGCAAGCCTTTGTGTACTTACCCCAGGACAGATGGCAAATCATGAAGgtaatttcaa ... tttctttcagATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCA
EST: CGTGGCAAGCCTTTGTGTACTTACCCCAGGACAGATGGCAAATCATGAAG ATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCA
genomic: CGTGGCAAGCCTTTGTGTACTTACCCCAGGACAGATGGCAAATCATGAAGgtaatttcaa ... tttctttcagATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCA
cgaagttgaaagatatggtttttgatgatacgacagcacttgtcctttctttcagATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCAAAGATGGAAATGAACCCTGCTCGTGTTGTGGGAATGTCTCTATCCGTAA
ttttgat putative branch site (score: 8)
cacttgtcctttcttt putative PPT
aaagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcaattcgaagttgaaagatatggtttttgatgatacgacagcacttgtcctttctttcagATCCCTCTTGATTCGTATCTACCCACATGGAGAGGAAATGTGATCGAAGCAAAGATGGAAATGAACCCTGCTCGTGTTGTGGGAATGTCTCTATCCGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA